Life Sciences at ISOLDE Using PAC-spectroscopy Tilman Butz Universität Leipzig, Germany Outline Why Spectroscopy? Perturbed angular correlation (PAC) of.

Slides:



Advertisements
Similar presentations
157 T INTERNAL MAGNETIC FIELD IN Fe[C(SiMe 3 ) 3 ] 2 COMPOUND AT 20K Ernő Kuzmann, 1,2 Roland Szalay, 2 Attila Vértes, 1,2 Zoltán Homonnay, 2 Imre Pápai,
Advertisements

Relaxation Time Phenomenon & Application
Γ spectroscopy of neutron-rich 95,96 Rb nuclei by the incomplete fusion reaction of 94 Kr on 7 Li Simone Bottoni University of Milan Mini Workshop 1°-
Experimental Techniques in Protein Structure Determination Homayoun Valafar Department of Computer Science and Engineering, USC.
Determination of Protein Structure. Methods for Determining Structures X-ray crystallography – uses an X-ray diffraction pattern and electron density.
Contributions to Nuclear Data by Radiochemistry Division, BARC
“ !” completely different mechanisms. catalysis: the process by which a catalyst changes the rate and mechanism of a chemical reaction -- a catalyst is…
Dynamics of Vibrational Excitation in the C 60 - Single Molecule Transistor Aniruddha Chakraborty Department of Inorganic and Physical Chemistry Indian.
Special Applications in Fluorescence Spectroscopy Miklós Nyitrai; 2007 March 14.
Enzymes: Protein Catalysts Increase rates of reaction, but not consumed. Enable reactions to occur under mild conditions: e.g. temperature, pH. High reaction.
Biomolecular Nuclear Magnetic Resonance Spectroscopy BIOCHEMISTRY BEYOND STRUCTURE Protein dynamics from NMR Analytical Biochemistry Comparative Analysis.
Biomolecular Nuclear Magnetic Resonance Spectroscopy BIOCHEMISTRY BEYOND STRUCTURE Protein dynamics from NMR Analytical biochemistry Comparative analysis.
Formation of 2D crystalline surface phases on liquid Au-based metallic glass forming alloys S. Mechler, P. S. Pershan, S. E. Stoltz, S. Sellner Department.
HARMONICALLY MODULATED STRUCTURES S. M. Dubiel * Faculty of Physics and Computer Science, AGH University of Science and Technology, PL Krakow, Poland.
Towards a molecular movie: Transient 2D-IR spectroscopy Peter Hamm Physikalisch Chemisches Institut, Universität Zürich.
Ultrafast Spectroscopy
1 Surface Enhanced Fluorescence Ellane J. Park Turro Group Meeting July 15, 2008.
European Joint PhD Programme, Lisboa, Diagnostics of Fusion Plasmas Spectroscopy Ralph Dux.
Time out—states and transitions Spectroscopy—transitions between energy states of a molecule excited by absorption or emission of a photon h =  E = E.
Magnetic properties of SmFeAsO 1-x F x superconductors for 0.15 ≤ x ≤ 0.2 G. Prando 1,2, P. Carretta 1, A. Lascialfari 1, A. Rigamonti 1, S. Sanna 1, L.
How NMR is Used for the Study of Bio-macromolecules Analytical biochemistry Comparative analysis Interactions between biomolecules Structure determination.
FRET and Other Energy Transfers Patrick Bender. Presentation Overview Concepts of Fluorescence FRAP Fluorescence Quenching FRET Phosphorescence.
Physical Chemistry 2 nd Edition Thomas Engel, Philip Reid Chapter 28 Nuclear Magnetic Resonance Spectroscopy.
Chemistry 20 Chapter 15 Enzymes.
Quantum & Physical Chemistry Computational Coordination Chemistry HARDWARE Did you know that:  The quantum mechanical wave equations can nowadays be solved.
57 Mn Mössbauer collaboration at ISOLDE/CERN Emission Mössbauer spectroscopy of advanced materials for opto- and nano- electronics Spokepersons: Haraldur.
The Study of Noble Gas – Noble Metal Halide Interactions: Fourier Transform Microwave Spectroscopy of XeCuCl Julie M. Michaud and Michael C. L. Gerry University.
Biochemical applications of perturbed angular correlation of γ-rays (PAC) spectroscopy Lars Hemmingsen HFI/NQI 2010.
1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, Structural observation of the primary isomerization in vision.
Dynamics Neutron Scattering and Dan Neumann
1 Amino Acids, Proteins, and Enzymes Enzymes Enzyme Action Factors Affecting Enzyme Action Enzyme Inhibition.
NanoDLSay TM – A Powerful Tool for Nanoparticle, Nanomedicine, Biomolecular and Pharmaceutical Research February 2010 Copyright.
Plasma diagnostics using spectroscopic techniques
Seeing Enzymes in Action with Laser T- jump Time-resolved XAS/XPE/XWAS Jung Y. Huang Keywords: liquid phase, metalloproteins,
States and transitions
Proteins I BCH 302 [practical].
Computer Simulation of Biomolecules and the Interpretation of NMR Measurements generates ensemble of molecular configurations all atomic quantities Problems.
Why Diffraction, Why Neutrons? J. A. Dura Neutron Small Angle Scattering and Reflectometry NCNR Summer School on June 26, 2006.
 Magnetism and Neutron Scattering: A Killer Application  Magnetism in solids  Bottom Lines on Magnetic Neutron Scattering  Examples Magnetic Neutron.
Nuclear Medicine 4103 Section I Basic Chemistry. Structure of The Atom Nucleus: contains Protons (+) and Neutrons (0) Electron (-) orbiting the nucleus.
Advanced Analytical Chemistry – CHM 6157® Y. CAIFlorida International University Updated on 9/26/2006Chapter 3ICPMS Interference equations Isobaric.
UNIVERSITÄT DES SAARLANDES 1 Introduction to solid state physics at ISOLDE Th. Wichert (Universität des Saarlandes) Nuclear Physics & Astrophysics at CERN.
Ch. Urban 1, S. Janson 1, U. Ponkratz 1,2, O. Kasdorf 1, K. Rupprecht 1, G. Wortmann 1, T. Berthier 3, W. Paulus 3 1 Universität Paderborn, Department.
HOW DO ENZYMES ACHIEVE SPECIFISITY?
LITERATURE SEARCH ASSIGNMENT A) Properties of diatomic molecules A diatomic molecule is a molecule composed of two atoms. For homonuclear diatomics the.
Perturbed Angular Correlation studies of Hg coordination mechanisms on functionalized magnetic nanoparticles P. Figueira, M. Silva Martins, A. L. Daniel-da-Silva,
Biochemistry Study of chemical reactions that take place in our body everyday Chemical reactions allow us to remain alive – Rearrangement of chemical bonds.
Atomic structure model
CHBE 452 Lecture 28 Mechanism of Catalyst Action 1.
Diffusion in Intermetallic Compounds
Förster Resonance Energy Transfer (FRET)
Ch 10 Pages ; Lecture 24 – Introduction to Spectroscopy.
Molecular Dynamics Arjan van der Vaart PSF346 Center for Biological Physics Department of Chemistry and Biochemistry Arizona State.
Infrared Spectra of Anionic Coinage Metal-Water Complexes J. Mathias Weber JILA and Department of Chemistry and Biochemistry University of Colorado at.
LIST status and outlook Sven Richter for the LIST-, RILIS- and Target-Collaborations 21 st of August 2013.
Pb(II) and Hg(II) binding to de novo designed proteins studied by 204m Pb- and 199m Hg-perturbed angular correlation of γ- rays (PAC) spectroscopy: Clues.
SuperCHICO; a 4π heavy-ion detector C.Y. Wu and D. Cline An arsenal of auxiliary charged-particle detectors must be an integral component of GRETA in order.
How NMR is Used for the Study of Biomacromolecules Analytical biochemistry Comparative analysis Interactions between biomolecules Structure determination.
New emission Mössbauer spectroscopy studies at ISOLDE in 2015 Haraldur Páll Gunnlaugsson, Torben E. Mølholt, Karl Johnston, Juliana Schell, The Mössbauer.
Dynamics theory and experiment 1. Atomic motion and energy flow in the reacting molecules. 2. Atomic motion and energy flow in the reacting surface/substrate.
C 60 - Single Molecule Transistor Aniruddha Chakraborty Indian Institute of Technology Mandi, Mandi , Himachal Pradesh, India.
SCI3023 ELECTROCHEMISTRY Chapter 8e: Potentiometry
Emission Mössbauer spectroscopy of advanced materials for opto- and nano-electronics Spokepersons: Haraldur Páll Gunnlaugsson Sveinn Ólafsson Contact person:
Monte Carlo methods in spallation experiments Defense of the phD thesis Mitja Majerle “Phasotron” and “Energy Plus Transmutation” setups (schematic drawings)
New Tilted-Foils Plus beta-NMR Setup at REX-ISOLDE
Status report on the study of biological systems at ISOLDE: IS448 and IS488 Monika Stachura, Lars Hemmingsen University of Copenhagen, Denmark.
Bioreactors Engineering
Experimental Overview
Ultrafast Infrared Spectroscopy as a Probe of Molecular Dynamics: A Molecular Modeling Study Christopher P. Lawrence, Department of Chemistry, Grand Valley.
catalysis: the process by which a catalyst changes the
Presentation transcript:

Life Sciences at ISOLDE Using PAC-spectroscopy Tilman Butz Universität Leipzig, Germany Outline Why Spectroscopy? Perturbed angular correlation (PAC) of γ-rays Why ISOLDE? Selected examples Advantages and limitations

Why Hyperfine Spectroscopy on Biomolecules? Structural information is usually obtained by single crystal diffraction What to do if the biomolecules do not crystallize? What to do if only very small amounts of material are available? Sometimes internal dynamics renders entire domains „invisible“ by diffraction, e.g. in trypsinogen. Often internal dynamics is crucial for the function. Solution: Spectroscopy like EPR, Mössbauer, Perturbed Angular Correlation Requires isomorphous replacements with suitable isotopes

Angular correlation of γ-rays: Angular correlation of γ-rays is a property of the nuclear decay: γ1γ1 111 Cd The distance from the center to the curve gives the probability of emission of γ 2 in that direction

Perturbed angular correlation of γ-rays: The influence of extra-nuclear fields 111 Cd Hamilton Phys. Rev., 1940, 58:122, Brady and Deutsch Phys. Rev. 1947, 72:870, Goertzel Phys. Rev., 1946, 70:897, Aeppli et al. Phys. Rev., 1951, 82, 550, Leipert et al. Nature, 1968, 220:907 Butz Z. Naturforsch. 1996, 51A:396 Oscillations in the angular correlation give ω 1, ω 2, and ω 3 – a finger print of the local charge distribution

PAC in a nutshell Calculate spectroscopic data based on putative structure Compare W180 W90 L. Hemmingson, Copenhagen

Why ISOLDE? Isomorphous replacement should be performed with isotopes which have isomeric states; otherwise, chemical transmutation can cause after-effects. The additional requirement of a cascade with a sufficiently longlived intermediate state narrows down the number of suitable radioisotopes. Suitable PAC-isotopes are e.g. 111m Cd, 199m Hg, 204m Pb; all happen to be shortlived (about 1 hour) and have to be produced on-line. Because of the large molecular weight of the biomolecules no-carrier added activity is required. ISOLDE meets all these requirements !

Protein-protein interactions Plastocyanin binding to photosystem 1 Cu-plastocyanin (wildtype) binds to PS1 Ag-plastocyanin binds to PS1, but Cd-plastocyanin does not. ( 111 Ag decays to 111 Cd) 111 Ag mimicks Cu Cd mimicks Cu ++ Note: The experiments were carried out without added sucrose. Danielsen et al. Biochemistry, 1999, 38:11531

Metal ion binding site structure and dynamics Azurin (P. aeruginosa) and plastocyanin (spinach) Linewidth reveals internal motion in plastocyanin Bauer et al. JACS, 1997, 119:157, Tröger et al. Z. Naturforsch., 1996, 51A:431, Danielsen et al. Biochemistry, 1999, 38:11531,

Metal ion binding site structure during catalysis (bovine Carboxypeptidase A) Bauer et al. Biochemistry,1997, 36:11514

Results on Azurin with 111m Cd and 199m Hg Experiments performed at ISOLDE W. Tröger and T. Butz, Hyp. Int. 129 (2001) 511. Azurin a small electron transfer protein 111m Cd 111 Ag 199m Hg 111m Cd 111 Ag 199m Hg

First results with 204m PbBr 2 at ISOLDE Sven Friedemann, Diploma Thesis, 2004, U. Leipzig Frank Heinrich, PhD thesis 2005, U. Leipzig Complication: I = 4  many spectral lines

First results with 204m Pb Sven Friedemann. Diploma Thesis, 2004, U. Leipzig Solution: Cross-Correlation compresses information into a spot

First results with 204m Pb in Azurin Frank Heinrich, PhD Thesis, 2005, U. Leipzig Result: incomplete isomorphous replacement probe V zz (a.u.)  111m Cd m Hg m Pb Similar  means rigid metal coordination solvent solvent + azurin azurin

Outlook: Freeze quench PAC spectroscopy Snap shots of structures evolving during enzyme catalyzed reactions (Future research planned by L. Hemmingsen, Copenhagen) EnzymeSubstrate

Advantages and limitations of PAC- spectroscopy Advantages: Metal ion binding site structure and dynamics can be measured Protein-protein and protein- membrane interactions can be measured High sensitivity to structural changes Small amounts of sample needed (in principle 1 pmol, but 100 nM for 111m Cd substituted proteins) Different physical states (crystals, solutions, in vivo...) Mechanically stable, allowing for stirring, flow,... Limitations: PAC isotope must bind strongly to the molecule of interest Spectral parameters do not uniquely determine structure After effects can cause problems (in particular for EC) Production of PAC-isotopes

Researchers involved Copenhagen, Denmark Rogert Bauer († 2004) Lars Hemmingsen Mikael Jensen Lars Olsen Eva Danielsen, Klara N. Sas Morten J. Bjerrum Jens Ulstrup & group Henrik V. Scheller University of Leipzig, Germany Tilman Butz Wolfgang Tröger Frank Heinrich Sven Friedemann Saarland University, Gemany Hans Werner Adolph Michael Zeppezauer & group Lund University, Sweden Eila Cedergren-Zeppezauer Ulf Ryde University of Michigan, USA Vincent L. Pecoraro & group Göteborg University, Sweden Örjan Hansson Harvard Medical School, USA David S. Auld