1 XSPAN: A Cross-Species Anatomy Network MRC, Human Genetics Unit Heriot-Watt University, Dept. of Comp & EE, Albert Burger.

Slides:

Advertisements

Similar presentations

Dr. Leo Obrst MITRE Information Semantics Information Discovery & Understanding Command & Control Center February 6, 2014February 6, 2014February 6, 2014.

Advertisements

1 Ontolog OOR Use Case Review Todd Schneider 1 April 2010 (v 1.2)

Oyster, Edinburgh, May 2006 AIFB OYSTER - Sharing and Re-using Ontologies in a Peer-to-Peer Community Raul Palma 2, Peter Haase 1 1) Institute AIFB, University.

Intelligent Technologies Module: Ontologies and their use in Information Systems Revision lecture Alex Poulovassilis November/December 2009.

MRC Human Genetics Unit 7-Feb-02Richard Baldock 1 The Mouse Gene-Expression Information Resource Richard Baldock MRC Human Genetics.

1 A Systematic Nomenclature for Embryo Anatomy MRC, Human Genetics Unit Heriot-Watt University, Dept. of Comp & EE, Albert Burger.

Linking ontologies to one another and to the Cell Ontology with the COBrA ontology editor Jonathan Bard & Stuart Aitken Biomedical Science & Informatics.

Chapter 2 Database System Concepts and Architecture

Using the Semantic Web to Construct an Ontology- Based Repository for Software Patterns Scott Henninger Computer Science and Engineering University of.

Ontology Notes are from:

Semantic Web and Web Mining: Networking with Industry and Academia İsmail Hakkı Toroslu IST EVENT 2006.

Interfaces Supporting Knowledge Discovery In Data (ISKDD) BSE(Hons) Name: Mark Hollands Id: Supervisor: Assoc. Prof. Trevor Dix.

IST SEWASIE general meeting Aachen, March 14, 2005 System Evolution Tools Maurizio Vincini and Enrico Franconi.

CIA 2003 th International Workshop on Cooperative Information Agents CIA th International Workshop on Cooperative Information Agents DIA: Data Integration.

Systems Analysis and Design in a Changing World, 6th Edition 1 Chapter 6.

ICPCA 2008 Research of architecture for digital campus LBS in Pervasive Computing Environment 1.

Automatic Data Ramon Lawrence University of Manitoba

ELSE (eLearning for Software Engineering) S. Stojanov ECL, University of Plovdiv.

David Harrison Senior Consultant, Popkin Software 22 April 2004

May 30, 2005BIONLP Lexical Issues in Anatomical Ontologies Sarah Luger based on work with Stuart Aitken and Bonnie Webber.

Mind Map of the HL7 Security and Privacy Ontology Developed by Diana Proud-Madruga Presented / Demonstrated by Tony Weida May 5, 2014.

Software Architecture April-10Confidential Proprietary Master Data Management mainly inspired from Enterprise Master Data Management – An SOA approach.

The UDK: The Environmental Data Catalog of Germany and Austria Dr. Fred Kruse Coordination Center UDK/GEIN.

Genome database & information system for Daphnia Don Gilbert, October 2002 Talk doc at

Digital | Curation | Centre The UK Digital Curation Centre Michael Day UKOLN, University of Bath (with thanks to Peter Burnhill, Chris Rusbridge, et al.)

The Portuguese SDI and its Contribution for the GSDI Cristina Gouveia CNIG Portugal.

Core 2: Bioinformatics CBio-Berkeley. Outline Berkeley group background Core 2 first round –what: aims, milestones –how: software lifecycle, interaction.

Gene Expression Databases: Where and When Dave Clements EuReGene and Mouse Atlas projects Medical Research Council Human Genetics.

CASIMIR Networking Meeting Heathrow, July 2007 CASIMIR WP4 Data Representation John Hancock Duncan Davidson.

Taverna and my Grid Basic overview and Introduction Tom Oinn

Peer-to-Peer Data Integration Using Distributed Bridges Neal Arthorne B. Eng. Computer Systems (2002) Supervisor: Babak Esfandiari April 12, 2005 Candidate.

DECISION SUPPORT SYSTEM ARCHITECTURE: The data management component.

CoGenTex, Inc. Ontology-based Multimodal User Interface in MOQA AQUAINT 18-Month Workshop San Diego, California Tanya Korelsky Benoit Lavoie Ted Caldwell.

Brian Matthews, CRIS 2002, 30/08/02 ERIS Workshop, CRIS2002 Architecture Brian Matthews, Business & Information Technology Dept, CLRC

Taverna and my Grid Open Workflow for Life Sciences Tom Oinn

Patterns for E-Research Dave Berry, Research Manager E-Research within the University of Edinburgh, 2 nd March 2005.

Ontologies and Lexical Semantic Networks, Their Editing and Browsing Pavel Smrž and Martin Povolný Faculty of Informatics,

1 Schema Registries Steven Hughes, Lou Reich, Dan Crichton NASA 21 October 2015.

Database A database is a collection of data organized to meet users’ needs. In this section: Database Structure Database Tools Industrial Databases Concepts.

Registry Services Bringing Value to US EPA, States, and Tribes Exchange Network Vendors Meeting April 24, 2007 Cynthia Dickinson EPA/OEI/OIC Data Standards.

5 - 1 Copyright © 2006, The McGraw-Hill Companies, Inc. All rights reserved.

Object Oriented Multi-Database Systems An Overview of Chapters 4 and 5.

NA-MIC National Alliance for Medical Image Computing UCSD: Engineering Core 2 Portal and Grid Infrastructure.

Computing Ontology Part II. So far, We have seen the history of the ACM computing classification system – What have you observed? – What topics from CS2013.

Data Staging Data Loading and Cleaning Marakas pg. 25 BCIS 4660 Spring 2012.

First Meeting of the AgentLink SIG on Intelligent Information Agents (I2A) Hotel Euroflat, Brussels September 24-25, 1998 Report Innes A. Ferguson, SIG.

Ontology-Based Computing Kenneth Baclawski Northeastern University and Jarg.

INCF Digital Atlasing Infrastructure: An Overview.

Core 2: Bioinformatics NCBO-Berkeley. Core 2 Specific Aims 1.Apply ontologies  Software toolkit for describing and classifying data 2.Capture, manage,

FAO of the UN Library and Documentation Systems Division AOS workshop Beijing April 04 Tutorial 2: Ontology Tools Boris Lauser Food and Agriculture Organization.

Issues in Ontology-based Information integration By Zhan Cui, Dean Jones and Paul O’Brien.

Edinburgh e-Science MSc Bob Mann Institute for Astronomy & NeSC University of Edinburgh.

SYNTHESIS An information system for administration documentation and promotion of cultural instances Center for Cultural Informatics Foundation for Research.

A centre of expertise in digital information management Shaping the e-future? Grids, Web Services and Digital Libraries Professor Tony.

1 Open Ontology Repository initiative - Planning Meeting - Thu Co-conveners: PeterYim, LeoObrst & MikeDean ref.:

Fire Emissions Network Sept. 4, 2002 A white paper for the development of a NSF Digital Government Program proposal Stefan Falke Washington University.

Irwin/McGraw-Hill Copyright © 2000 The McGraw-Hill Companies. All Rights reserved Whitten Bentley DittmanSYSTEMS ANALYSIS AND DESIGN METHODS5th Edition.

Towards the Adaptive Semantic Web Peter Dolog Nicola Henze Wolfgang Nejdl Michael Sintek.

Brian Matthews, euroCRIS, 18/09/03 CRIS architecture to support an ERA Brian Matthews.

E-SI Theme: Exploiting Diverse Sources of Scientific Data Re-use or Re-invention - a Roadmap for Data Integration 27 th -28th November 2006 Prof. Jessie.

Human Genetics Unit Managing The High-Throughput Gene Expression Dataflow in Eurexpress Lalit Kumar Yin Chen Duncan Davidson Richard Baldock.

J. Douglas Armstrong Institute for Adaptive and Neural Computation, School of Informatics, University of Edinburgh. Bioinformatics at Edinburgh.

Middleware independent Information Service

Stanford Medical Informatics

Lecture #11: Ontology Engineering Dr. Bhavani Thuraisingham

Knowledge Based Workflow Building Architecture

Dr Kristin Stock Allworlds Geothinking

Central Host or Networked Lgov Systems

Presentation transcript:

1 XSPAN: A Cross-Species Anatomy Network MRC, Human Genetics Unit Heriot-Watt University, Dept. of Comp & EE, Albert Burger

XSPAN: A Cross-Species Anatomy Network 15 April 2002NeSC: Database Access and Integration (DAI)2 XSPAN Cross-Species Anatomy Network; Joint project between Heriot-Watt University and Edinburgh University; Funded under BBSRC’s e-Science Bioinformatics initiative; Two phases: XSPAN core; XSPAN ontology; To be hosted at MRC HGU, Edinburgh; Datasets: Mouse, Human, Zebrafish, Drosophila, C. elegans;

XSPAN: A Cross-Species Anatomy Network 15 April 2002NeSC: Database Access and Integration (DAI)3 MRC Human Genetics Unit: Mouse Atlas Project Iconic Symbolic Space

XSPAN: A Cross-Species Anatomy Network 15 April 2002NeSC: Database Access and Integration (DAI)4 Mouse Atlase: Anatomy Browser

XSPAN: A Cross-Species Anatomy Network 15 April 2002NeSC: Database Access and Integration (DAI)5 Anatomy Hierarchies A BC Stage i A BC DEFG Stage j

XSPAN: A Cross-Species Anatomy Network 15 April 2002NeSC: Database Access and Integration (DAI)6 Anatomy Hierarchies A BC Stage i A BC DEFG Stage j H

XSPAN: A Cross-Species Anatomy Network 15 April 2002NeSC: Database Access and Integration (DAI)7 Anatomy Hierarchies A BC Stage i A BC DEFG Stage j H

XSPAN: A Cross-Species Anatomy Network 15 April 2002NeSC: Database Access and Integration (DAI)8 EdAMS Software Architecture:

XSPAN: A Cross-Species Anatomy Network 15 April 2002NeSC: Database Access and Integration (DAI)9 XSPAN core: Make use of existing datasets; Distributed approach vs central data warehouse approach; Developing a generic XML Schema for embryo anatomy (for interoperability); Graphical User Interfaces and program level access (Web Service?); To include heuristics (as in EdAMS), natural language processing techniques and confirmed and rejected mappings database;

XSPAN: A Cross-Species Anatomy Network 15 April 2002NeSC: Database Access and Integration (DAI)10 XSPAN ontology Formalisation of embryo anatomy ontologies; Use of DAML+OIL, OWL, … ; Additional reasoning capabilities (FaCT); To be integrated with XSPAN-core;

XSPAN: A Cross-Species Anatomy Network 15 April 2002NeSC: Database Access and Integration (DAI)11 XSPAN Issues Update problem: underlying embryo databases can/will change; XSPAN-ontology to eventually replace XSPAN-core or co-exist? How to make use of XSPAN-core to provide semi- automatic support for the creation of XSPAN- ontology? How to make XSPAN available to maximise interoperability with other bioinformatics resources (not just other ontologies)? What software support can be given to make building XSPAN a community effort?

XSPAN: A Cross-Species Anatomy Network 15 April 2002NeSC: Database Access and Integration (DAI)12 XSPAN: People Heriot-Watt Uni. Albert Burger Werner Nutt Patrick Holt Gus Ferguson Kenneth McLeod Aba-Sah Dadzie Rosely Kumoi Edinburgh Uni. Jonathan Bard Bonnie Webber Stuart Aitken …