GBrowse: Generic Genome Browser May 2003 Update Lincoln Stein, CSHL.

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Presentation transcript:

GBrowse: Generic Genome Browser May 2003 Update Lincoln Stein, CSHL

New Features

Database Adaptors  Bio::DB::GFF Schema  MySQL  PostgreSQL  Oracle  Text file  Chado Schema  PostgreSQL  BioSQL Schema  MySQL  EMBL Proxy

Multiple Alignment Display

Histograms & XY Plots

Configurable Overview

Flip Coordinates

Plugin Layer for Gene Predictors

Lots of New Glyphs  Splice acceptor/donor glyph  Microarray red/green box glyph  Cytogenetic band glyph  X/Y graph glyph

Coming real soon now

Synteny Browser

Feature Filtering & Coloring  Filtering  Limit feature displays to those matching selected attributes.  Coloring  Color background of features matching selected attributes.

Remote Annotation  Full DAS Support  Multiple databases merged into one display  Multiple database types merged onto display  Local  Remote  Flat file  Relational

Credits CSHL Shuly Avraham Scott Cain BDGP Chris Mungall ShengQiang Shu ISI Paul Edelfsen Robert Hubley HGMP-RC Fugu Shawn Hoon Elsewhere Marc Colisimo Marc Logghe