Conclusions 1.Synapsin IIa is expressed in the brain of adult zebrafish, however we did not find expression in the eye, gut, muscle, or heart. 2.The data.

Slides:



Advertisements
Similar presentations
Serial Analysis of Gene Expression Velculescu, V., Zhang, L., Vogelstein, B. Kinzler, K. (1995) Science.
Advertisements

Identification and Cloning of Two Hyperprolinemia Genes in Danio rerio Abbie Werner, Department of Biology, York College Introduction Hyperprolinemia is.
Methods Results The Effect of Temperature on DISC-1 Expression in Zebrafish Embryos Tyler Jermyn Department of Biological Sciences, York College of Pennsylvania.
Mapping Genetic Risk of Suicide Virginia Willour, Ph.D.
The cloning and expression of SNAP-25a and b in zebrafish Maia Lavarias*, Dr. Wendy Boehmler Department of Biology, York College of Pennsylvania, York,
Identification of a Mammalian Homolog to Amphibian Allurin, a Sperm Chemoattractant Zachary Harrison, Deborah D. Ricker, Ph.D., and Jeffrey P. Thompson,
Part Fundamentals of Physiology Part II Food, Energy, and Temperature Part III Integrating systems Part IV Movement and Muscle Part V Oxygen, Carbon dioxide,
Discovery Of A Novel Nucleotide Sequence In Taricha granulosa David J. Stanley Mentor: Frank L. Moore Department of Zoology.
Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development By Golling et. al Presented by: Pam Lincoln.
A Novel Third Isoform of Zebrafish Cytochrome Oxidase IV Brandon Smith Dr. Nancy Bachman, Faculty Advisor.
Stem Cells and Regenerative Medicine. “Glow-in-the-dark” dogs!
Excitable Tissues- Synapse Prof. K. Sivapalan. Synapses June 2013Synapse2.
Expression Analysis of Activating Transcription Factor 4 (ATF 4) in Zebrafish: Implications for Coffin-Lowry Syndrome Introduction Objectives Methods Results.
Alterations in Expression Levels of Synapsin IIa After Haloperidol Treatment in Zebrafish Embryos (Danio Rerio) Rachel Klein, Department of Biological.
Investigation of Syntaxin 3B in Developing Zebrafish Embryos Derek Anderson* and Wendy Boehmler, PhD Department of Biological Sciences, York College of.
Manufacture of Human Interleukin 13 Protein Using a Prokaryotic Expression System Ryan Rupp, York College of Pennsylvania, Department of Biological Sciences.
Cells Treated with serial diluted compound and incubated for 24 hours Evaluating the Effects of Small Molecule Drugs on Correcting Alternative Splicing.
Cardiac Expression of CaMK-II  2 in Zebrafish Ludmila Francescatto Dr. Robert Tombes' Lab July 20, 2007.
1 5,466 6,938 bp Forward Primer Reverse Primer zebrafish sorl1 gene Evolution and Expression of an Alzheimer’s Disease Associated Gene, sorl1 in Zebrafish.
YUEMIN DING Neuro-oncology Group Department of Molecular Neuroscience
Conclusion We were successful in the design of the siRNA vector with AGT-1 insert and transformation of HT115 cells resulting in the silencing of AGT-1.
Zebrafish as a Model to Investigate the Disease Mechanisms of Infantile Neuronal Ceroid Lipfuscinosis Nicole Brant and Dr. Wendy Boehmler, Department of.
Centra Dogma Primer. Structure of DNA and RNA Nucleic acids made of nucleotides G, A, T/U, C Ribose vs. deoxyribose Template-dependent synthesis Double.
Biological Approach to SZ Psychology. Biological explanation of Sz The dopamine hypothesis if the oldest and most established hypothesis of sz Dopamine.
Pain in the Neck: An Investigation of TSHr Gene Expression in a Population with Abundant Hypothyroidism Wesley Anderson and Ronald Kaltreider, Ph.D. Department.
Determining if the fused product of Botox A and GFP can be used to observe the binding patterns of Botulinum toxin A. Felicia Yothers Department of Biological.
Introduction The Sigma-1 receptor was discovered in 1976 by pharmacological studies with drug addiction model systems. More recently, it has been found.
Characterization of RDR Gene Expression Johnny R. Nunez and Lisa K. Johansen Community College of Denver and University of Colorado at Denver and Health.
The Effects of Caffeine on Learning and Memory in Zebrafish (Danio rerio) Erica Pantelich, Department of Biology, York College INTRODUCTION:  Learning.
The effects of Malathion and the comparison to the NTE1 gene in yeast Ashley Swift Mentor: David Singleton Introduction : Malathion is a widely used organophosphorous.
Molecular characterization of the DYX1C1 gene and its application as a cancer biomarker Heui-Soo Kim 1, Yun-Ji Kim 1, Jae-Won Huh 1,2, Dae-Soo Kim 1,3,
Identification of a Homolog for a Potential Sperm Chemoattractant in the Zebrafish, Danio rerio Aiden Soroko Department of Biological Sciences, York College.
Molecular characterization of the DYX1C1 gene and its application as a cancer biomarker Yun-Ji Kim 1 *, Jae-Won Huh 1,2 *, Dae-Soo Kim 3, Min-In Bae 1,
The Synaptic transmission M.Bayat PhD
The role of of SynCAM2a in synapse formation Sofia Nakhnikian-Weintraub, Smith College 2012 Mentor: Courtney Easley-Neal, PI: Phil Washbourne.
HIP14 in zebrafish was successfully cloned into a pDrive and sequenced. Alignment analysis was performed by comparing the amino acid sequence in zebrafish.
How are synaptic vesicles clustered? Daniel Gitler, Department of Physiology and Cell biology, Faculty of Health Sciences and Zlotowski Center for Neuroscience,
STEM CELL RESEARCH ON HUNTINGTON’S DISEASE Josh Merrifield, Michael Jennings, and Stephanie Antone.
Retinoic Acid Induces Cleft Palate by Suppressing Fgf10 in the Bend Region of the Palatal Shelves. Yasuo Sakai 1, M.D., Ph.D. Junko Okano 2, M.D., Ph.D.
Louis et al. Figure S1 Mean expression intensity Figure S1. MPL1 expression in Arabidopsis organs The Genevestigator tool (
Questions How does RNA polymerase work and what does it make? How does it know where to start and stop? How does a ribosome work and what does it make?
Small interfering ribonucleic acids (siRNA’s) are double stranded RNA molecules used to post transcriptionally silence genes by binding to specific mRNA.
Sapana Shinde, Aaron Ripley, Dr. Sok Kean Khoo MicroRNA expression studies in rotenone- induced cellular model for Parkinson’s disease Department of Cell.
Long Term Potentiation
Figure 1 Myotubularin exhibits a tyrosine phosphatase activity
Uncovering the Protein Tyrosine Phosphatome in Cattle
Whole transcriptome sequencing reveals photoreceptors mRNA expression in nocturnal cutlass fish during the midnight Ji-Yeon Hyeon1, Jun-Hwan Byun1, Seong-Rip.
Figure 1. Partial genetic and physical map of chromosome 5q
Drugs affecting Neurotransmission
Relationship between Genotype and Phenotype
by Nancy D. Borson, Martha Q. Lacy, and Peter J. Wettstein
A Missense Mutation (R565W) in Cirhin (FLJ14728) in North American Indian Childhood Cirrhosis  Pierre Chagnon, Jacques Michaud, Grant Mitchell, Jocelyne.
The Molecular Basis of Malonyl-CoA Decarboxylase Deficiency
Volume 84, Issue 3, Pages (February 1996)
A Novel Gene Causing a Mendelian Audiogenic Mouse Epilepsy
A Tripartite Protein Complex with the Potential to Couple Synaptic Vesicle Exocytosis to Cell Adhesion in Brain  Stefan Butz, Masaya Okamoto, Thomas C.
Volume 10, Issue 8, Pages (April 2000)
Kinases are 1. 7% of all human genes
Hiroaki Matsunami, Linda B Buck  Cell 
Mutation of Solute Carrier SLC16A12 Associates with a Syndrome Combining Juvenile Cataract with Microcornea and Renal Glucosuria  Barbara Kloeckener-Gruissem,
Yuji Yamanashi, David Baltimore  Cell 
Alternative Functions of Core Cell Cycle Regulators in Neuronal Migration, Neuronal Maturation, and Synaptic Plasticity  Christopher L. Frank, Li-Huei.
In situ confirmations of Sepw1-enriched genes.
Unravelling the genetic mechanisms behind Cardiovascular Disease
Cloning of a novel gene in the human kidney homologous to rat munc13s: Its potential role in diabetic nephropathy  Yong Song, Menachem Ailenberg, Mel.
Relationship between Genotype and Phenotype
Cloning and mapping of zebrafish nls/raldh2.
The zebrafish ortholog of human JunB is expressed in the zebrafish heart. The zebrafish ortholog of human JunB is expressed in the zebrafish heart. (A)
Mutation of the Ca2+ Channel β Subunit Gene Cchb4 Is Associated with Ataxia and Seizures in the Lethargic (lh) Mouse  Daniel L Burgess, Julie M Jones,
Identification of a New Splice Form of the EDA1 Gene Permits Detection of Nearly All X- Linked Hypohidrotic Ectodermal Dysplasia Mutations  Alex W. Monreal,
Presentation transcript:

Conclusions 1.Synapsin IIa is expressed in the brain of adult zebrafish, however we did not find expression in the eye, gut, muscle, or heart. 2.The data presented here represents the first analysis of temporal expression of the synapsin IIa gene in developing zebrafish embryos. 3.Sequence comparisons and syntenic analysis supports the identification of a novel zebrafish synapsin II homolog. Objectives 1.Determine if there is expression of the synapsin IIa gene in adult zebrafish tissues. 2.Determine if there is expression of synapsin IIa gene during different developmental timepoints in zebrafish embryos. The Identification and Expression of Synapsin IIa in Zebrafish Kelly Welsh and Wendy Boehmler, Department of Biological Sciences York College of Pennsylvania Introduction Synapsins (I, II, and III) are a family of neuronal phoshoproteins that play an important role in neurotransmitter release by releasing synaptic vesicles in the presynaptic terminal to move towards the plasma membrane for exocytosis. Synapsins have also been implicated in neurite outgrowth, the stabilization of synapses, and synaptic vesicle docking, fusion, and recycling. It has been reported that synapsin II expression levels are decreased in post-mortem brain samples of schizophrenic patients. It is unclear whether the decrease in expression is the cause or result of the disease or whether antipsychotic drug treatment effects the expression of synapsin II. Synapsins and synapsin-like genes have been characterized in a variety of invertebrates and vertebrates, however the synapsin genes have yet to be characterized in zebrafish. Because zebrafish are now being increasingly used as a genetic model and to model a variety of human diseases, we focused our studies on the cloning and characterization of zebrafish synapsin IIa. Methods Searches of expressed sequence tag databases ( led to the identification of a potential zebrafish Synapsin IIa homolog (Gene Accession number NM ). RT-PCR was conducted using RNA collected from adult zebrafish and embryos. Future Experiments Determine the spatial expression of synapsin IIa gene during different developmental timepoints in zebrafish embryos Perform a whole-mount in situ hybridization on embryonic zebrafish using the cloned synapsin IIa gene to determine its spatial and temporal expression pattern. Determine whether antipsychotic drug treatment alters the expression levels of synapsin IIa in zebrafish. Literature Cited Cesca, F., Baldell, P., Valtorta, F., & Benefenat, F. (2010). The synapsin key actors of synapse function and plasticity. Progress in Neurobiology, 91, Chong, V.Z., Skoblenick, K., Morin, F., Xu, Y., Mishra, R.K., Dopamine-D1 and -D2 receptors differentially regulate synapsin II expression in the rat brain. Neuroscience, 138, 587–599. Gene Name Zebrafish Chromosome Human Chromosome SynII233 rhoa233 craf233 plxnbl233 tkt233 her9233 slc41a3233 Figure 4: Comparison of zebrafish and human Synapsin II. Human and zebrafish SynapsinII amino acid sequences were aligned using CLUSTALW. Dashes in sequences allow optimal alignment for amino acid insertions/deletions. Identical amino acids are shown and similar amino acids are highlighted by plus signs. (Identities = 314/480 (66%) ) Domains A and C are highlighted, Domain A and B contain phosphorylation sites and Domain C stabilizes the interaction. Results Table 1: Markers and Genes Syntenic with SynII Gene in Zebrafish and Humans. Used tissues from zebrafish brain, eye, gut, heart & muscle and 24, 42, and 72 hours post fertilization (hpf) embryos RNA IsolationcDNA PCR Denatured at 95°C Annealed at 46°C Elongated at 72°C 30 cycles Zebrafish Synapsin IIa gene cloned addiction-dirkh.blogspot.com Figure 1: RT-PCR analysis of Synapsin IIa from zebrafish embryos. The SynIIa gene was amplified from zebrafish brain, 24 hpf, and 72 hpf. The primers used encompassed the predicted ATG start codon and stop codon to produce an amplicon of 1420 base pairs (bp). Ladder PCR Purification of Synapsin IIa Ligation Transformation (Cesca et al. 2010) ZF 2a 1 MNYLRRRLSDSTFISNLPNGYMSDLQKPDPPQPPPPGPAPVPAPASGPAPVSPRQ--ERK 58 MN+LRRRLSDS+FI+NLPNGYM+DLQ+P+P QPPPP P A ++ AP + ER+ Human2b2 MNFLRRRLSDSSFIANLPNGYMTDLQRPEPQQPPPPPPPGPGAASASAAPPTASPGPERR 61 ZF 2a 59 PIQPQP GLGTGFFSSITNVVKQTAASAGLVEQTSVPASSKR-IKILLVIDE 108 P +G+ FFSS++ VKQTAASAGLV R K+LLV+DE Human2b62 PPPASAPAPQPAPTPSVGSSFFSSLSQAVKQTAASAGLVDAPAPAPAAARKAKVLLVVDE 121 ZF 2a 109 PQHDWAKLFRGKKLNGDYDIKVEQAEFGDISIVAHANGSCNVAVQVLQNENKVLRSFKPD 168 P DWAK FRGKK+ GDYDIKVEQAEF ++++VAHA+G+ V +QVL+N KV+RSF+PD Human2b122 PHADWAKCFRGKKVLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPD 181 ZF 2a 169 FVLIRQHAFSMTENEDFRNLIIGLQYAGIPSINSLESVYNLCDKPWAFACLINTYKKLGQ 228 FVLIRQHAF M ENEDFR+LIIG+QYAG+PSINSLES+YN CDKPW FA L+ YK LG Human2b182 FVLIRQHAFGMAENEDFRHLIIGMQYAGLPSINSLESIYNFCDKPWVFAQLVAIYKTLGG 241 ZF 2a 229 EKFPLIEQTFYPNYKEMVTMPAFPVVVKIGHAHSGVGKVKVENHTKFQDIASVVAITQTY 288 EKFPLIEQT+YPN+KEM+T+P FPVVVKIGHAHSG+GKVKVENH FQDIASVVA+TQTY Human2b242 EKFPLIEQTYYPNHKEMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTY 301 ZF 2a 289 STCEPFIDPKYDIRIQKIGNDYKAYMRTSVSGNWKSNTGTAMVEQVAMTDRYKLWVDTCC 348 +T EPFID KYDIR+QKIGN+YKAYMRTS+SGNWK+NTG+AM+EQ+AM+DRYKLWVDTC Human2b302 ATAEPFIDSKYDIRVQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDTCS 361 ZF 2a 349 EIFGGLEICAVKAINGKDGKDYITEVMGSSMPLMGEHQAQDQQLIADMVIAKMNHVMAQ- 407 E+FGGL+ICAVKA++GKDGKDYI EVM SMPL+GEHQ +D+QLI ++VI+KMN ++++ Human2b362 EMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITELVISKMNQLLSRT 421 ZF 2a NPKRP-TAIQPKQITVENNTLVEVKNAPPQKAPPQGCLQYILDCNGVAVGPKLVQAN 463 +P+RP T QP+ T+++ + PPQ+ PPQGCLQYILDCNG+AVGPK VQA+ Human2b422 PALSPQRPLTTQQPQSGTLKDP---DSSKTPPQRPPPQGCLQYILDCNGIAVGPKQVQAS 478