Simple Infection Model Huaizhi Chen. Simple Model The simple model of infection process separates the population into three classes determined by the.

Slides:



Advertisements
Similar presentations
Modeling of Complex Social Systems MATH 800 Fall 2011.
Advertisements

Disease emergence in immunocompromised populations Jamie Lloyd-Smith Penn State University.
Epidemics Modeling them with math. History of epidemics Plague in 1300’s killed in excess of 25 million people Plague in London in 1665 killed 75,000.
Epidemiologisten tartuntatautimallien perusteita Kari Auranen Rokoteosasto Kansanterveyslaitos Matematiikan ja tilastotieteen laitos Helsingin yliopisto.
A VERY IMPORTANT CONCEPT Disease epidemiology is first and foremost a population biology problem Important proponents: Anderson, May, Ewald, Day, Grenfell.
Disease Dynamics in a Dynamic Social Network Claire Christensen 1, István Albert 3, Bryan Grenfell 2, and Réka Albert 1,2 Bryan Grenfell 2, and Réka Albert.
Modified SIR for Vector-Borne Diseases
Dynamical Models of Epidemics: from Black Death to SARS D. Gurarie CWRU.
In biology – Dynamics of Malaria Spread Background –Malaria is a tropical infections disease which menaces more people in the world than any other disease.
Nik Addleman and Jen Fox.   Susceptible, Infected and Recovered S' = - ßSI I' = ßSI - γ I R' = γ I  Assumptions  S and I contact leads to infection.
Persistence and dynamics of disease in a host-pathogen model with seasonality in the host birth rate. Rachel Norman and Jill Ireland.
HIV in CUBA Kelvin Chan & Sasha Jilkine. Developing a Model S = Susceptible I = Infected Z = AIDS Patients N = S+I = Active Population.
The Tools of Demography and Population Dynamics
Chapter 52 Reading Quiz A group of individuals of the same species hanging out in the same area at the same time is called a ____. A bunch of nesting penguins.
1 6.3 Separation of Variables and the Logistic Equation Objective: Solve differential equations that can be solved by separation of variables.
Chapter 9: Leslie Matrix Models & Eigenvalues
Chapter 10 Population Dynamics
Mortality Rate.
How does mass immunisation affect disease incidence? Niels G Becker (with help from Peter Caley ) National Centre for Epidemiology and Population Health.
Modified SIR for Vector- Borne Diseases Gay Wei En Colin 4i310 Chua Zhi Ming 4i307 Jacob Savos AOS Katherine Kamis AOS.
Modelling the Spread of Infectious Diseases Raymond Flood Gresham Professor of Geometry.
Epidemiology modeling with Stella CSCI Stochastic vs. deterministic  Suppose there are 1000 individuals and each one has a 30% chance of being.
Hepatitis B.
Population Biology: Demographic Models Wed. Mar. 2.
Section 1.2 Some Mathematical Models. TERMINOLOGY A model starts by (i) identifying the variables that are responsible for changing the system and (ii)
Bellringer #2: Geography Terms. Birth Rate The # of live births per 1000 individuals within a population. The # of live births per 1000 individuals within.
Public Health in Tropics :Further understanding in infectious disease epidemiology Taro Yamamoto Department of International Health Institute of Tropical.
SIR Epidemic Models CS 390/590 Fall 2009
32.1 The Science of Epidemiology
Hepatitis B - Sexually Transmitted Infection - Infects the liver and causes inflammation - About 1/3 people in the world have Hepatitis B - Can lead to.
V5 Epidemics on networks
Modelling infectious diseases Jean-François Boivin 25 October
Epidemiology With Respect to the Dynamics of Infectious Diseases Huaizhi Chen.
BASICS OF EPIDEMIC MODELLING Kari Auranen Department of Vaccines National Public Health Institute (KTL), Finland Division of Biometry, Dpt. of Mathematics.
Sanja Teodorović University of Novi Sad Faculty of Science.
DIFFERENTIAL EQUATIONS 9. Perhaps the most important of all the applications of calculus is to differential equations. DIFFERENTIAL EQUATIONS.
Eradication and Control Let R be the effective reproductive rate of a microparasite: Criterion for eradication:
Population Calculations Data from: Population Reference Bureau World Population Data Sheet. Available at
Differential Equations 7. Modeling with Differential Equations 7.1.
Modeling frameworks Today, compare:Deterministic Compartmental Models (DCM) Stochastic Pairwise Models (SPM) for (I, SI, SIR, SIS) Rest of the week: Focus.
Mathematical Modeling of Bird Flu Propagation Urmi Ghosh-Dastidar New York City College of Technology City University of New York December 1, 2007.
Epidemic (Compartment) Models. Epidemic without Removal SI Process Only Transition: Infection Transmission SIS Process Two Transitions: Infection and.
CDC's Model for West Africa Ebola Outbreak Summarized by Li Wang, 11/14.
Millenium Development Goals United Nations Millennium Development Goals  8 goals designed to help developing countries meet basic needs  Goals.
DEMOGRAPHY -2.
HIV Human Immunodeficiency Virus Flu Like Rashes Weight Loss Treatments include- AIDS Cocktail and AZT NO CURE Becomes AIDS 6 month 10+years Body fluid.
Population Dynamics Review
SIR Epidemic and Vaccination
Sources of Fish Decline Habitat disruption Breeding areas Larval development areas Bottom structure.
This presentation is made available through a Creative Commons Attribution- Noncommercial license. Details of the license and permitted uses are available.
Predicting the Future To Predict the Future, “all we have to have is a knowledge of how things are and an understanding of the rules that govern the changes.
Def: The mathematical description of a system or a phenomenon is called a mathematical model.
SS r SS r This model characterizes how S(t) is changing.
NUR 431.  A discipline that provides structure for systematically studying health, disease, and conditions related to health status ◦ Distribution of.
Comparing Australia with Developing Countries Morbidity, life expectancy, infant mortality, adult literacy and immunisation rates can be used to compare.
SIR Epidemics 박상훈.
Matrix modeling of age- and stage- structured populations in R
Table 1 Groups of subjects in a study of the association between antibiotic use and colonization with resistant pneumococci. From: Measuring and Interpreting.
Parasitism and Disease
Modelling infectious diseases
Parasitism and Disease
Predicting the Future To Predict the Future, “all we have to have is a knowledge of how things are and an understanding of the rules that govern the changes.
Predicting the Future To Predict the Future, “all we have to have is a knowledge of how things are and an understanding of the rules that govern the changes.
Trends in Microbiology
Differential Equations
Anatomy of an Epidemic.
Susceptible, Infected, Recovered: the SIR Model of an Epidemic
© 2014 by Princeton University Press
Differential Equations As Mathematical Models
Presentation transcript:

Simple Infection Model Huaizhi Chen

Simple Model The simple model of infection process separates the population into three classes determined by the following functions of age and time: X(a,t) = susceptible population Y(a,t) = infected population Z(a,t) = immune population

Governing Equations The dynamics of the simple model is governed by the following partial differential equations:

Parameters Where

Boundary Conditions We have the following initial conditions: At a = 0 – Y(t)=Z(t)=0, X(t) = B(t), where B(t) is net birth rate at t At t = 0 – X(a), Y(a), Z(a) must be defined.

Additional Classes Other Classes Can be Incorporate into the model – Take Latent Period: We can divide the Y period to H and Y’ Where H is the latent period and Y’ is the infectious period

Latent Period Where we have a new parameter representing the per capita transfer from latent infected to infectious infected.

Maternal Antibodies Temporary immunity can be granted to newly born infants from an immune mother. This can be incorporated into the simple model.

Verticle Transmission Some infections can be passed directly to the new-born offspring of an infected parent. This phenomenon can be represented by tweaking the boundary condition at a = 0 and have X(0,t) = B 1 (t), Y(0,t) = B 2 (t), and Z(0,t) = 0.

Separate Treatments of Male/Female Often, for sexually transmitted diseases, it would be helpful to stratify the variables by sex. Like - X m, X f, Y m, Y f, Z m, Z f and govern those classes with separate dynamics.

Recovery v(t) can be modeled in various manners. Type A (constant) and Type B (step) Proportion Infected

Loss of Immunity We can also modify the simple model to incorporate loss of immunity by incorporate the parameter gamma.

Natural Mortality Mortality can be modeled similarly to recovery. Type I and Type II

Disease-Induced Mortality Generally a constant is used in place of the alpha function; however depending on the disease, it may be advantageous to model alpha by age. For example, malaria and measles exhibit greater mortality in infants.

Transmission The transmission parameter can be modeled by: Where beta is the probability that an infected individual of age a would infect a susceptible of age a’. A specific case with constant probability is

Other Concerns Seasonality – The beta parameter in the transmissions equation can be very seasonal. Nutritional State – Nutritional state of the population can exert changes in the mortality, transmission, and other rate parameters. Homogenous Mixing – Examples have shown important effects of heterogeneity in most real populations.