TOWARDS A FRENCH -SCIENCE ? Results of the e-Biogenouest project (2012-2014) Coordination : Olivier Collin – Yvan Le Bras (IRISA) e -Test an e-Science.

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Presentation transcript:

TOWARDS A FRENCH -SCIENCE ? Results of the e-Biogenouest project ( ) Coordination : Olivier Collin – Yvan Le Bras (IRISA) e -Test an e-Science approach in Life Sciences -Propose an e-Science structuration in Western France Goals

MY PROFILE Translation Integration Systemic scale

BREAK SILOS Challenge: -each domain is specific! but digital… Solution: -have a digital point of view of the data!

OPTIMIZE / STANDARDIZE Challenge: -computing, storage, network optimisation Solution: -focus on interoperability, use ontologies -focus on code / algorithms enhancement Kahn. On the future of genomic data. Science (2011) vol. 331 (6018) pp

PEOPLE PARADOX More automation More needs for human, for expertise Challenge: -lacks human resources, change the uses Solutions: -mutualization, collaboration -citizen science approach Using Clouds for Metagenomics: A Case Study Wilkening et al. IEEE cluster 2009 Sequencing Analyzes Cost switch

A SYSTEM OF SYSTEM An e-Science « tool »: the Virtual Research Environment ICT Scientific domain

FROM REGIONAL TO NATIONAL An oriented VRE e-Science approach -a software connection -an infrastructure connection 1.VRE on existing open source tools 2.Guided by Communities 3.Infrastructure & Human Optimization, a goal! Mutualisation Don’t reinvent the wheel Avoid silos French Bioinformatics Institute (IFB) ? Western eScience centre for life sciences (CeSciGO) ?

Thank you for your attention eBGO HUB (collaboration) EMME portal (data management) Galaxy instance (data analysis) GenOuest Bioinformatics core facility Symbiose IRISA/INRIA group GenOuest-Dyliss-Genscale Cyril Monjeaud Oliver Collin

-SCIENCE OVER THE WORLD e 1.$ for infrastructure 2.Human Resource 3.Tools / Virtual laboratories New developments Proprietary software Silos lack optimization Waste management? Well done! UK National eScience Center Australian National eResearch Collaboration Tools & Resources (NeCTAR) Netherlands eScience Center (NLeSC) Washington e-Science Institute NSF office of cyberinfrastructure Nordic eScience Globalisation Initiative (NeGI) Nordic e-Infrastructure Collaboration (NeIC) Denmark eScience Center Swedish Research Centre (SERC) Finland, Iceland, Norway