Scratchpads An online platform for biodiversity data Laurence Livermore Biodiversity Informatics | Department of Life Sciences Natural History Museum London.

Slides:

Advertisements

Similar presentations

Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication.

Advertisements

Virtual Biodiversity ViBRANT Strategic Board advisory group: objectives and role Vince Smith Natural History Museum, London ViBRANT Virtual.

Virtual Biodiversity ViBRANT 8th e-Infrastructure Concertation Meeting CERN, Geneva, November 4-5th 2010 Vincent S. Smith Natural History Museum, UK

Vincent S. Smith Simon D. Rycroft, Ben Scott & Dave Roberts Scratchpads redefining publication getting biodiversity online.

Cybertaxonom y Vincent S. Smith The use of computers and networks in a program of taxonomic research.

Virtual Biodiversity ViBRANT WP4 Standards meeting: setting the agenda Vince Smith Natural History Museum, London ViBRANT Virtual Biodiversity.

Scratchpads Vincent S. Smith, Simon D. Rycroft, & Dave Roberts getting biodiversity on the web.

Vincent S. Smith Simon D. Rycroft, Ben Scott & Dave Roberts Scratchpads redefining publication getting biodiversity online.

Virtual Biodiversity ViBRANT Scripting Life: ViBRANTs kick-off meeting Vince Smith Natural History Museum, London ViBRANT Virtual Biodiversity.

Incentivising Biodiversity Data Publishing: GBIF-Pensoft Partnership Vishwas Chavan 1, Lyubomir Penev 2,3, Teodor Georgiev 3 1 Global Biodiversity Information.

How to publish genomic Data papers based on BOL data - Biodiversity Data Journal Lyubomir Penev Bulgarian Academy of Sciences & Pensoft Publishers ViBRANT.

Use it or lose it: Crowdsourcing support and outreach activities in a hybrid sustainability model for e-infrastructures The ViBRANT project case studies.

Making your data work for you: Scratchpads, publishing & the Biodiversity Data Journal Vince Smith 1, Dave Roberts 1 & Lyubomir Penev 2 1. Natural History.

Don’t make me think Biodiversity data publishing made easy Vince Smith, Alice Heaton, Laurence Livermore, Simon Rycroft, Ben Scott & Lyubomir Penev* The.

Scratchpads Virtual Research Environments for taxonomic and biodiversity related data Dr Dimitrios Koureas Department of Life Sciences | Biodiversity Informatics.

Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT.

Making small data big! The Biodiversity Data Journal (BDJ) Lyubomir Penev, Jordan Biserkov, Teodor Georgiev, Pavel Stoev, David Roberts, Vincent Smith.

The Naturalist Fredrik Ronquist Swedish Museum of Natural History.

Publish or perish? Linking Scratchpads and the new Biodiversity Data Journal for streamlining publication of botanical data D.N Koureas 1, L. Penev 2 &

Making small data big! The Biodiversity Data Journal (BDJ) Lyubomir Penev, Teodor Georgiev, Pavel Stoev, David Roberts, Vincent Smith ViBRANT.

Facilitating biodiversity science through

Service activities ViBRANT Project Year 3/Final Review Meeting – Brussels Description & Objectives WP Description WP Objectives WP partners.

Scratchpads Publishing biodiversity: The interplay between Scratchpads and the Biodiversity Data Journal Dr Dimitrios Koureas Biodiversity Informatics.

The XML mark up process from the viewpoint of a biodiversity publisher Lyubomir Penev, Donat Agosti, Teodor Georgiev, Terry Catapano, Vladimir Blagoderov,

CSDMS Website CSDMS.colorado.edu Albert Kettner 10/10/2008EKT workshop1/7.

Dimitris Koureas, Vince Smith & Simon Rycroft Natural History Museum London Linking data, services and communities using Virtual Research Environments.

Streamlining the registration- to-publication pipeline Lyubomir Penev, Teodor Georgiev, Pavel Stoev Sherborn Meeting, NHM London, 28 Oct 2011 ViBRANT.

Link yourself or perish? PhytoKeys, the next generation journal in systematic botany Lyubomir Penev 1, W. John Kress 2, Sandra Knapp 3, De-Zhu Li 4, Susanne.

Open access journals Pensoft Journal Ststem PJS 2.0 Lyubomir Penev Bulgarian Academy of Sciences & Pensoft Publishers ViBRANT ViBRANT Tools for DNA taxonomists,

The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures Andreas Kohlbecker 1, Yde de Jong 2, Cherian Mathew 1, Lorna Morris.

Fourth Annual Summit | Feb | Tucson, AZ Scratchpads for community involvement for natural history collections Dr Dimitris Koureas Biodiversity.

Making small data big: The Biodiversity Data Journal (BDJ) Lyubomir D. Penev 1,3, Teodor A. Georgiev 3, Pavel E. Stoev 2,3, David M. Roberts 4 & Vincent.

Sustainability of EDIT Informatics Activities. BoD working group on sustainability Executive Summary, 20th July 2009: “… set of themes we are sure we.

Nurturing a community based sustainability model Support and outreach structures in Scratchpads Livermore L. & Koureas D. Biodiversity Informatics Group.

To be Published for free or to be Read for free: OA publishing from an Easterneuropean perspective Lyubomir Penev Pensoft Publishers, Sofia APE 2011 Berlin.

Scratchpads Publication Module - A paradigm shift in publishing RBG Kew, Seminar,

Small pieces loosely joined Building scientific web communities with Scratchpads S. Rycroft, D. Roberts, K. Harman, V. Smith.

Introduction to OBIS-USA Biological Data, Applications, & Relationships March 14, 2011.

Virtual Biodiversity ViBRANT Vince Smith & Dave Roberts Natural History Museum, London ViBRANT Virtual Biodiversity.

At the frontline of publishing in systematic zoology: A presentation of ZooKeys Lyubomir Penev 1, Terry Erwin 2, Jeremy Miller 3 1 Pensoft Publishers,

The Pensoft Journal System and XML-based workflow Lyubomir Penev Life and Literature Conference, Chicago 2011 ViBRANT Virtual Biodversity.

Training course on biodiversity data publishing and fitness-for-use in the GBIF Network, 2011 edition How Darwin Core Archives have changed the landscape.

Dimitris Koureas, PhD Natural History Museum London Linking layers of biodiversity data: Informatics challenges for the long tail research RDA - Long Tail.

Virtual Biodiversity ViBRANT Data publishing Lyubomir Penev, Vince Smith, Dave Roberts, Pavel Stoev ViBRANT Virtual Biodiversity “BioFresh goes Political”

Standards and tools for publishing biodiversity data Yu-Huang Wang June 25, 2012.

ViBRANT Virtual Biodiversity Research Project overview Isabella Van de Velde Royal Belgian Institute of Natural Sciences, Brussels.

Enhancing formal and professional training capacity in Biodiversity Informatics: Collaboration and funding opportunities Dimitris Koureas Natural History.

A paradigm shift in biodiversity publishing: mobilization, mark up, reuse and integration of small data Lyubomir D. Penev 1,3, Teodor A. Georgiev 3, Pavel.

Biodiversity Data Journal: mobilization, reuse and integration of small data Lyubomir D. Penev 1,3, Teodor A. Georgiev 3, Pavel E. Stoev 2,3, Jordan Bisserkov.

Scratchpads Virtual Research Environments for taxonomic and biodiversity related data Reading,

Resolving the publishing bottleneck and increasing data interoperability in biodiversity science Lyubomir Penev, Teodor Georgiev, Pavel Stoev, David Roberts,

Scratchpads The virtual research environment for biodiversity data Simon Rycroft, Dave Roberts, Vince Smith, Alice Heaton, Katherine Bouton, Laurence Livermore,

An Introduction to Scratchpads: Making your data work for you Laurence Livermore Natural History Museum, London Joinville, Brazil.

Don’t make me think Biodiversity Data Publishing Made Easy Laurence Livermore, Vince Smith, Alice Heaton, Simon Rycroft, Ed Baker, Ben Scott & Lyubomir.

Open Access and Web 2.0 in the Academic Library: A South African Experience Part 2: UJ Sciences Librarian Web 2.0 Pavlinka Kovatcheva University of Johannesburg,

Scratchpads and the new Biodiversity Data Journal Biodiversity Data Publishing made… easier Dimitris Koureas Natural History Museum London.

NLBIF The Netherlands Biodiversity Information Facility NLBIF The Netherlands Biodiversity Information Facility Cees Hof Netherlands Biodiversity Information.

Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Andreas Kohlbecker, Pepe Ciardelli, Niels Hoffmann, Katja Luther, Andreas Müller Botanic Garden.

The New GBIF Data Portal Web Services and Tools Donald Hobern GBIF Deputy Director for Informatics October 2006.

Virtual Biodiversity ViBRANT Vocabularies, Standards, merging and linking Data Olaf Banki University of Amsterdam ViBRANT Virtual Biodiversity.

Riccardi: DIALOGUE Workshop August 1, 2005 Supported by NSF BDI 1 Representing and Using Phylogenetic Characters in Morphbank Greg Riccardi, David Gaitros,

Experts Workshop on the GBIF INTEGRATED PUBLISHING TOOLKIT V. 2 IPT Resources Alberto González Talaván Global Biodiversity Information Facility (GBIF)

Earthworm Collections of the World Emma SHERLOCK, Laurence LIVERMORE & Ben SCOTT Natural History Museum London, Dept of Life Sciences Abstract A website.

Scratchpads Virtual Research Environments for taxonomic and biodiversity related data.

GBIF Governing Board 20 Module 6B: New GBIF Tools II 2013 Portal and NPT Startup Daniel Amariles IT Leader, National Biodiversity Information System of.

Scratchpads Virtual Research Environments for taxonomic and biodiversity related data Dr. Vince Smith Informatics Research Leader The Natural History Museum.

Objectives Overview of the QC Learning Lab Enrolling in online courses

The IPT user interface and data quality tools

GBIF Governing Board 20 12th Global Nodes Meeting

Data publishing from the viewpoint of a biodiversity publisher

Presentation transcript:

Scratchpads An online platform for biodiversity data Laurence Livermore Biodiversity Informatics | Department of Life Sciences Natural History Museum London 2015 NFBR and BES Conference A Question of Ecology – Answers from Biological Recording

What are Scratchpads? Hosted websites for biodiversity data Virtual research & publication platform Completely open access & open source Modular & flexible Running for over 7 years with 680+ sites and 6,700+ users

Regional faunistic and floral treatments Examples of use:

Invasive species resources Examples of use:

Journals and news groups Examples of use:

Dynamic taxon pages using tagged content The main features Support for storing and managing many data types Tools to manage biological classifications Publication module (beta) – formally publish using data in your Scratchpad Extensive tools for importing and exporting data from external services Regional (inc. Vice Counties) and coordinate-based distribution maps

Taxon pages Overview of data related to taxon Generated from tagged content The main features

Store, manage, export and share data

Dynamic Biological Classifications Manually entered or imported Auto generated The main features

Distribution maps Google maps based Data layers Occurrence data Distribution data TDWG regions GBIF data The main features

Structured data Publish, cite, disseminate & archive data Select, describe & annotate data Publication module Major repositories Publication Module (beta)

data mobilisation more on the way… External services Integration

Help & Support In-site Support Wiki Training Courses Ambassadors Programme Embedded Issues Queue Sandbox Site

Scratchpads strategic steering - Vince Smith, Dimitris Koureas, Simon Rycroft Scratchpads technical development -Simon Rycroft, Ben Scott, Ed Baker, Alice Heaton, Katherine Bouton, Khalid Almaini Scratchpads outreach -Laurence Livermore, Isa van de Velde & Dimitris Koureas ViBRANT -Vince Smith, Dave Roberts & Lucy Reeve Pensoft - Lyubomir Penev and the Pensoft team Our 6700 users Acknowledgements