Neuroimaging Use Case David N. Kennedy, PhD. Department of Psychiatry University of Massachusetts Medical School University of Massachusetts Medical School.

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Presentation transcript:

Neuroimaging Use Case David N. Kennedy, PhD. Department of Psychiatry University of Massachusetts Medical School University of Massachusetts Medical School Child and Adolescent NeuroDevelopment Initiative Data Citation: Let’s Do It! Jan 11, 2015 Data Citation: Let’s Do It! Feb 3, 2016 David N. Kennedy, PhD., Leah Honor, MLIS & Christian Haselgrove Department of Psychiatry University of Massachusetts Medical School University of Massachusetts Medical School Child and Adolescent NeuroDevelopment Initiative Lamar Soutter Library

Citation! Nested “DOIs” o Publication “DOI” DataSet “DOI” o Individual DataElement “DOIs” New publications using shared data cite the original Individual DataElement “DOIs” in the new DataSet “DOI” as part of the New Publication “DOI” Credit where credit is due: Through the citation of the original Individual DataElement “DOIs” in new publication datasets, original data providers and original publications are cited

doi: /schbul/sbm120

Neuroimaging Data “DOI’s” For tracking pooled use credit Documentation of of novel cohorts Cohort “DOIs” Derived data “DOIs” “DOIs” for everything!

Data Citation in Neuroimaging: Proposed Best Practices for Data Identification and Attribution (submitted) Objectives: 1.Uniquely identify data, and to what level of granularity; 2.Adequately cite datasets, and make those citations visible, quantifiable and reusable 3.Ensure the chain of proper attribution and credit is maintained - reuse Assume a generalized data structure – Neuroimaging: o A subject has numerous observations. o A study is typically comprised of a selected subset of observations from a group of subjects, chosen to answer a particular question of interest. These observations could be behavioral measures, clinical observations, or biophysical measurements, such as an MRI image or an electroencephalograph. In the context of neuroimaging, the most common observation is an image. o Studies are shared or published in a “repository” (many options), at the discretion of the researchers in order to: Provide the supporting data for a paper, Fulfill a grant-related data sharing requirement, etc. High-level information about the data needs to be openly available, accessible and queryable, (analogous to PubMed) and provide basic information about the data, regardless of hosting site, access permissions – Landing Pages.

Neuroimaging: What to cite? The most basic data-sharing element which should be indexed is that which could be meaningfully shared independently. In the neuroimaging context, an image from a subject (i.e. a T1-weighted volumetric scan) has meaning, whereas a specific slice of that scan (or single timepoint within a dynamic scan) would not, without the context provided by the rest of the slices (or timepoints). For this reason, the authors designated the image as the basic building block of the citation and credit system. By assigning a unique identifier at this level, various meaningful collections of these images can be assembled.

Neuroimaging: How to cite? DOIs (really this time!) o Images o Which can be grouped into Collections Projects Functional Collections Reference Implementation o XNAT and

Image Database Image Landing Page Project Landing Page

Functional DOI Generation QueryResult/SelectionTag Preparation New Functional-Level Collection Landing Page

Conclusion We have presented a system for neuroimaging data citation and credit with a practical implementation that meets the objectives of unique identification, data use tracking, and integration with traditional credit attribution systems If we had more time: o Metadata Schema o Landing Pages o Researcher Perspective o Data Host Perspective o Cost implications o Alternative Approaches o Barriers to wide-spread adoption within the neuroimaging community Researchers Data Hosting Sites Journals (editors, reviewers, publishers) Funding Agencies