Dynamic Energy Budget Theory - I Tânia Sousa with contributions from :Bas Kooijman
Metabolism in a DEB individual. Rectangles are state variables Arrows are flows of food J XA, reserve J EA, J EC, J EM, J ET, J EG, J ER, J EJ or structure J VG. Circles are processes The full square is a fixed allocation rule (the kappa rule) The full circles are the priority maintenance rule. A DEB organism Assimilation, dissipation and growth M V - Structure Feeding M H - Maturity Assimilation M E - Reserve Mobilisation Offspring M ER Somatic Maintenance Growth Maturity Maintenance Reproduction Maturation
Assimilation : X(substrate)+M E(reserve) + M + P linked to surface area Dissipation : E(reserve) +M M somatic maintenance: linked to surface area & structural volume maturity maintenance: linked to maturity maturation or reproduction overheads Growth : E(reserve)+M V(structure) + M Compounds : Organic compounds: V, E, X and P Mineral compounds: CO 2, H 2 O, O 2 and N waste 3 types of aggregated chemical transformations
Identify in these equations y XE, y PE and y EV. Constraints on the yield coeficients Degrees of freedom Exercises
Identify in these equations y XE, y PE and y EV. Constraints on the yield coeficients Degrees of freedom Obtain the aggregated chemical reactions for assimilation, dissipation and growth considering that the chemical compositions are: food CH 1.8 O 0.5 N 0.2, reserve CH 2 O 0.5 N 0.15, faeces CH 1.8 O 0.5 N 0.15, structure CH 1.8 O 0.5 N 0.15 and NH 3. Exercises
Identify in these equations y XE, y PE and y EV. Constraints on the yield coeficients Degrees of freedom Obtain the aggregated chemical reactions for assimilation, dissipation and growth considering that the chemical compositions are: food CH 1.8 O 0.5 N 0.2, reserve CH 2 O 0.5 N 0.15, faeces CH 1.8 O 0.5 N 0.15, structure CH 1.8 O 0.5 N 0.15 and NH 3. How would you obtain the aggregate chemical transformation? Exercises
The stoichiometry of the aggregate chemical transformation that describes the organism has 3 degrees of freedom: any flow produced or consumed in the organism is a weighted average of any three other flows
Write the energy balance for each chemical reactor (assimilation, dissipation and growth) Exercises
Indirect calorimetry (estimating heat production without measuring it): Dissipating heat is weighted sum of three mass flows: CO 2, O 2 and nitrogeneous waste (Lavoisier in the XVIII century).
Dissipating heat Steam from a heap of moist Prunus serotina litter illustrates metabolic heat production by fungi
Exercises
Obtain an expression for the dynamics of the reserve density m E Set dm E /dt=0 (weak homeostasis). What is the maximum value of m E ? Exercises
Obtain an expression for the dynamics of the reserve density m E Set dm E /dt=0 (weak homeostasis). What is the maximum value of m E ? Can you understand the meaning? What is the value for m E in weak homeostasis? Exercises
Obtain an expression for the dynamics of the reserve density m E Set dm E /dt=0 (weak homeostasis). What is the maximum value of m E ? Can you understand the meaning? What is the value for m E in weak homeostasis? Exercises