Non-Collective Communicator Creation Ticket #286 int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm) Non-Collective Communicator.

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Presentation transcript:

Non-Collective Communicator Creation Ticket #286 int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm) Non-Collective Communicator Creation in MPI. Dinan, et al., Euro MPI ‘11.

Non-Collective Communicator Creation  Currently: Collective operation  Non-Collective: Create communicator collectively only on new members 1.Avoid bulk synchronization –Load balancing: Reassign processes from idle groups to active groups 2.Overhead reduction –Multi-level parallelism, small communicators 3.Recovery from failures –Not all ranks in parent can participate 4.Compatibility with Global Arrays –Past: collectives using MPI Send/Recv 2 

Non-Collective Communicator Creation Algorithm 3 MPI_COMM_SELF (intracommunicator) MPI_Intercomm_create (intercommunicator) MPI_Intercomm_merge ✓

Non-Collective Algorithm in Detail RR 4 Translate group ranks to ordered list of ranks on parent communicator Calculate my group ID Left group Right group

Evaluation: Microbenchmark 5 O(log 2 g) O(log p)

Case Study: Markov Chain Monte Carlo  Dynamical nucleation theory Monte Carlo (DNTMC) –Part of NWChem –Markov chain Monte Carlo  Multiple levels of parallelism –Multi-node “Walker” groups –Walker: N random samples  Load imbalance –Sample computation (energy calculation) is irregular, can be rejected  Regroup idle processes into active group –Preliminary results: 30% decrease in total application execution time 6 T L Windus et al 2008 J. Phys.: Conf. Ser

 Santorini straw vote to proceed with a formal reading: Yes ( 16 ), No ( 0 ), Abstain ( 1 ) 7