See also: www.isb-sib.org See also: www.isb-sib.org 1. a short film produced with the help of graphic designers Studio KO introduced the key notions for.

Slides:



Advertisements
Similar presentations
SOMA2 – Drug Design Environment. Drug design environment – SOMA2 The SOMA2 project Tekes (National Technology Agency of Finland) DRUG2000 program.
Advertisements

The post-genomic challenge Exploring function across protein families using chemical probes  The CPFM is in early stages of development  Projects focus.
Education, Outreach and Training. Specifications Document Overall objective: Better integration of ecoinformatics, in general, and SEEK tools, specifically,
AutoDock 4 and AutoDock Vina -Brief Intruction
MitoInteractome : Mitochondrial Protein Interactome Database Rohit Reja Korean Bioinformation Center, Daejeon, Korea.
Jürgen Sühnel Institute of Molecular Biotechnology, Jena Centre for Bioinformatics Jena / Germany Supplementary Material:
Future CAMD Workloads and their Implications for Computer System Design IEEE 6th Annual Workshop on Workload Characterization.
Molecular dynamics refinement and rescoring in WISDOM virtual screenings Gianluca Degliesposti University of Modena and Reggio Emilia Molecular Modelling.
Jeffery Loo NLM Associate Fellow ’03 – ’05 chemicalinformaticsforlibraries.
Bioinformatics: a Multidisciplinary Challenge Ron Y. Pinter Dept. of Computer Science Technion March 12, 2003.
Introduction to Genomics, Bioinformatics & Proteomics Brian Rybarczyk, PhD PMABS Department of Biology University of North Carolina Chapel Hill.
Molecular Docking Using GOLD Tommi Suvitaival Seppo Virtanen S Basics for Biosystems of the Cell Fall 2006.
Luxembourg, Sep 2001 Pedro Fernandes Inst. Gulbenkian de Ciência, Oeiras, Portugal EMBER A European Multimedia Bioinformatics Educational Resource.
Dogan Seber, PhD San Diego Supercomputer Center University of California, San Diego I. DLESE Library II. DISCOVER OUR EARTH Earth Science Resources for.
Protein Structure and Drug Discovery Workshop To be held at Monash University, Mebourne, Australia October 3 rd to 4 th 2006 Molecular Visualization Learn.
Bioinformatics Ayesha M. Khan Spring Phylogenetic software PHYLIP l 2.
Welcome to the iTEC People & Events Directory … key points!
8/26/20151 Kick-off meeting 15-16/12/2008 Objectives and outcome Two year project C. Kourkoumelis, UoA.
December 2010iTEC - Designing the future classroom1 Virginija Birenienė iTEC community moderator iTEC Edukata tools in Education.
Computational Chemistry. Overview What is Computational Chemistry? How does it work? Why is it useful? What are its limits? Types of Computational Chemistry.
Clinical Research Training
Knowledgebase Creation & Systems Biology: A new prospect in discovery informatics S.Shriram, Siri Technologies (Cytogenomics), Bangalore S.Shriram, Siri.
Using the WS-PGRADE Portal in the ProSim Project Protein Molecule Simulation on the Grid Tamas Kiss, Gabor Testyanszky, Noam.
Visualizing Information in Global Networks in Real Time Design, Implementation, Usability Study.
High-Throughput Virtual Molecular Docking: Hadoop Implementation of AutoDock4 on a Private Cloud Sally R. Ellingson Graduate Research Assistant Center.
Group work based assessment in distance learning Dr Clare Sansom, CDE Fellow 20 July 2015.
Master’s Degrees in Bioinformatics in Switzerland: Past, present and near future Patricia M. Palagi Swiss Institute of Bioinformatics.
What is Computing? College of Computing Graphics, Visualization, and Usability Center
3D structure -Swiss Pdb Viewer
1 Recent Progress CMS Times Brochure Finances SG discussions Future activities Filming at P5 Brochures Web site Needs from CMS CMS Times Brochures etc.
Protein Molecule Simulation on the Grid G-USE in ProSim Project Tamas Kiss Joint EGGE and EDGeS Summer School.
INFSO-RI Enabling Grids for E-sciencE V. Breton, 30/08/05, seminar at SERONO Grid added value to fight malaria Vincent Breton EGEE.
FP WIKT '081 Marek Skokan, Ján Hreňo Semantic integration of governmental services in the Access-eGov project Faculty of Economics.
Open source software and web services for designing therapeutic molecules G. P. S. Raghava, Head Bioinformatics Centre, Institute of Microbial Technology,
Page 1 SCAI Dr. Marc Zimmermann Department of Bioinformatics Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) Grid-enabled drug discovery.
Integrating the Bioinformatic Technology Group into your research programme Introduction People and Skills Examples Integrating the BTG Contacts BHRC Away.
INFSO-RI Enabling Grids for E-sciencE In silico docking on EGEE infrastructure, the case of WISDOM Nicolas Jacq LPC of Clermont-Ferrand,
Data provenance in biomedical discovery Donald Dunbar Queen’s Medical Research Institute University of Edinburgh Workshop on Principles of Provenance in.
Bioinformatics MEDC601 Lecture by Brad Windle Ph# Office: Massey Cancer Center, Goodwin Labs Room 319 Web site for lecture:
Information Technology in the Natural Sciences Biology – Chemistry – Physics.
Computing and You ‘How can ICT help at home’. Aims of this session A practical hands-on session allowing you time to experience the software your children.
Open Data: How to Make Supply and Demand Meet? Beat Estermann, 12 June 2013.
Introduction to Chemoinformatics and Drug Discovery Irene Kouskoumvekaki Associate Professor February 15 th, 2013.
Integration of Bioinformatics into Inquiry Based Learning by Kathleen Gabric.
1 Mining Images of Material Nanostructure Data Aparna S. Varde, Jianyu Liang, Elke A. Rundensteiner and Richard D. Sisson Jr. ICDCIT December 2006 Bhubaneswar,
Roman. WHERE IS IT LOCATED AT?, Bunkyo, Tokyo WAS IS IT KNOW FOR? Founded in 1877, The University of Tokyo (known as Tokyo) is Japan's most prestigious.
See also: See also: 1. a short film produced by Studio KO graphic designers, which introduces the key notions for drug.
Artificial Intelligence Research Laboratory Bioinformatics and Computational Biology Program Computational Intelligence, Learning, and Discovery Program.
SE 431 Human Computer Interactions Jamal Nasir. How to design & build good UIs UI Development process Usability goals User-centered design Design discovery.
Milanesi Luciano Catania, Italy 13/03/2007 Bioinformatics challenges in European projects in Grid. Milanesi Luciano National Research Council Institute.
2014 Using machine learning to predict binding sites in proteins Jenelle Bray Stanford University October 10, 2014 #GHC
Docking and Virtual Screening Using the BMI cluster
Molecular Modeling in Drug Discovery: an Overview
Designing Drugs Virtually P14D461P - Arni B. Hj. Morshidi P14D389P - Anisah Bt Ismail P14D397P - Syarifah Rohaya Bt Wan Idris P14D394P - Dayang Adelina.
1 Using DLESE: Finding Resources to Enhance Teaching Shelley Olds Holly Devaul 11 July 2004.
Page 1 Computer-aided Drug Design —Profacgen. Page 2 The most fundamental goal in the drug design process is to determine whether a given compound will.
Theoretical investigating DNA binding properties in Rad51D as a way to find missing facts in Homologous Recombination Repair mechanism Lecturer: Mohammad.
SEMINAR 1. Title : Discovery of Protein-Protein Interaction Modulators Using Affinity-Based High-Throughput Screening 2. Speaker : Hyun-Suk Lim (포항공대 (POSTECH))
Using DLESE: Finding Resources to Enhance Teaching
ATOM Accelerating Therapeutics for Opportunities in Medicine
APPLICATIONS OF BIOINFORMATICS IN DRUG DISCOVERY
Action: BM0806 Recent Advances in Histamine Receptor H4R Research
Molecular Docking Profacgen. The interactions between proteins and other molecules play important roles in various biological processes, including gene.
CICC Combines Grid Computing with Chemical Informatics
Best Practices.
Ligand Docking to MHC Class I Molecules
Nancy Baker SILS Bioinformatics Seminar January 21, 2004
Budget.
Flashcards Chapter 8.
Language Technology and Data Analysis Laboratory (LADAL)
Presentation transcript:

See also: See also: 1. a short film produced with the help of graphic designers Studio KO introduced the key notions for drug design (protein target, disease, ligand, docking,…) Contact Drug Design for high school students, high school teachers and the public at large Our aim is to introduce, in an engaging and challenging way, concepts such as 3D structure, protein function, diseases and the role played by bioinformatics in drug discovery and development. What do we propose ? Blatter Marie-Claude 1,4, Daina Antoine 2, Baillie Gerritsen Vivienne 1, Marek Diana 3,4, Palagi Patricia M. 4, Xenarios Ioannis 1,3, Schwede Torsten 5, Michielin Olivier 2, Zoete Vincent 2 1 Swiss-Prot group, Geneva, 2 Molecular Modeling group, Lausanne, 3 Vital-IT group, Lausanne, 4 Training and Outreach group, 5 Computational Structural Biology group, Basel SIB Swiss Institute of Bioinformatics, Switzerland Funded by the FNS (Agora) and …… 2. ‘manual docking’ of 3D-printed small molecules into a 3D-printed structure representing the target protein ‘on scale’ and ‘manual docking’ with a camera system ( leap motion ) 3. tools embedded into a user friendly freely accessible web interface - allowing the design of new ‘virtual’ molecules, the visualization of their binding mode and the estimation of their affinity for the target protein to be compared with ‘real’ existing drugs 5. pen and pencil activities to illustrate how a computer encodes chemical structure (fingerprints) and how similarity between molecules is calculated. The proposed workshops give a simplistic yet realistic picture of using bioinformatics to support design of drug candidates. Hands-on sessions are for cancer (target BRAF and IDO1) and pain (target COX) treatments. More than 200 people attended our pilot workshops. Many of them, even with very limited chemical background, became enthusiastic about the challenge to sketch a molecule with possibly improved properties compared to well-known drugs, in competition with other participants. According to the results of a first evaluation (n=35), the participants (over 16 years) really appreciate to use bona fide bioinformatics tools in such activities. The students interested in sciences for their future studies also appreciate to discover a new professional field. The workshop is proposed by the public labs ‘Chimiscope’ in Geneva and ‘l’Eprouvette’ in Lausanne. Current efforts of translation in English and German will broaden geographic area to all over Switzerland and abroad. Are you interested? Contact us! a molecular docking simulation (AutoDock Vina) predicts the binding mode and compares the affinity of the molecule with the protein with existing drugs (score) 4. direct link to expert tools to predict possible targets ( SwissTargetPrediction) as well as important properties of the molecule to evaluate its potential to become a real drug (SwissADME) draw a new molecule in 2D (Marvin plot) 3D printed COX2 protein with 6 of its known ligands (non- steroidal anti- inflammatory drugs) iterative approach