Supplementary data/figures Khanim et al. Supplementary Figure 1 Figure 1A: Schematic of the two-step fluorescent NADPH assay used for identifying compounds.

Slides:



Advertisements
Similar presentations
ENZYMES!.
Advertisements

Supplementary Figure S1.
Sept 21, 2006 SMALL MOLECULE INHIBITORS OF ANTHRAX LETHAL FACTOR Phase I SBIR Project Period 7/01/05-6/30/07 P.I. Norton Peet John D. Williams.
Kinetic proofreading J.J. Hopfield 1974 tRNA – Ribosome analogy.
P449. p450 Figure 15-1 p451 Figure 15-2 p453 Figure 15-2a p453.
Chemical Buffers Edward A. Mottel Department of Chemistry Rose-Hulman Institute of Technology.
Factors that Affect the Function of an Enzyme Lab Conclusions.
2.4 Chemical Reactions KEY CONCEPT Life depends on chemical reactions.
63 Figure 14: Standard curve of  -AMP as measured by fluorescence intensity.  -AMP concentration was determined by absorbance spectroscopy.
pH and Buffers Acids and Bases Acids: H + donors  HCl  H + + Cl -  CH 3 COOH  CH 3 COO - + H + Bases: H + acceptors  NaOH + H +  Na + + H 2 O 
Brainstorm a list of factors that cause people to behave differently. Personality Experiences Heredity Environment Friends/Family Society.
Chemical Reactions and Enzymes. What is a Chemical Reaction? A process occurs when molecules interact to produce new chemical compounds Examples: CH 4.
Acid – Base Equilibria Buffer Solutions: –Question: Was the ICE Problem set up needed? –Answer: No. The assumption of x
Supplementary Figure 1. Suzuki et al. DAPI/BrdU BrdU 24 hrs 48 hrs 72 hrs.
Determining the Zinc and Magnesium Dependencies of Alkaline Phosphatase Andrew Ma, Elina Ly, Audrey Shi, and Ashley Vergara BIOC 463a Tuesday, November.
Shinkai and Tachibana, Genes&Dev Activation of Serine-Glycine Synthesis Pathway Repression of Tumor Suppressor gene Tumorigenesis K9 H3K9me1.
Chemical Reactions And Enzymes. Chemical Reactions  Processes that change one set of chemicals into another set of chemicals Reactants  Products (bonds.
Role of Enzymes. 1. Cells are possibly the smallest chemical factories in the world. They build chemical compounds (anabolism) from raw materials and.
Stereocenter. stereocenter Enzyme kinetic assay How fast does the reaction occur? How good of a catalyst is fumarase? Rate enhancement? What factors.
Enzymes Explain enzyme action and factors influencing their action Temperature pH Substrate concentration Feedback inhibition Competitive inhibition.
Chemical Reactions Make Life Possible! Chemical Reactions Proceed as Follows: ReactantsProducts Energy must be added to “activate” the reaction and break.
Common Ion Effect Buffers. Common Ion Effect Sometimes the equilibrium solutions have 2 ions in common For example if I mixed HF & NaF The main reaction.
Draw sketch graphs for enzyme activity with a competitive inhibitor present and for a non-competitive inhibitor present.
Hollander, et al, Table S1 Table S1 Decreased NNK-induced O 6 -mG adduct formation in the lung but not liver of pseudo-AJ Akt2-/- mice. Akt2+/+ and Akt2-/-
Supplementary Fig. S2 Elution profiles of amino acid derivatives in a UPLC system. The enzyme (1 μg) was incubated with 10 mM D -amino acid (2.5 mM D -Tyr)
Chemical Bonding Why do atoms form bonds?. Atoms form bonds to become more…
Closed: Au Open: Pt FeO x H y MnO x H y NiO x H y CoO x H y NiO x H y CoO x H y FeO x H y MnO x H y η = 450 mV.
The PCR Buffer.
Elements are the building blocks for all matter. Elements contain a single type of atom; elements cannot be further broken down by a chemical reaction.
PH and Buffers Bonnie Ownley Department of Entomology and Plant Pathology The University of Tennessee, Knoxville.
Time dependent inhibition
A B C J K L CdFOMT1 CdFOMT3 CdFOMT4 CdFOMT5 1 kbp * * * *
Chemical Reactions, Energy & enzymes
Lactate dehydrogenase reaction
by Sunghyouk Park, Michael E. Johnson, and Leslie W.-M. Fung
Nucleic Acids Made of: 5 carbon sugars, phosphate groups and nitrogen bases. Functions: carries hereditary information (instructions for making proteins!!)
Notes – Enzymes.
Inorganic Compounds Foldable Directions.
Anan Abu Ubeid, Longmei Zhao, Ying Wang, Basil M. Hantash 
HIV-Protease Inhibitors Reduce Cell Adherence of Candida Albicans Strains by Inhibition of Yeast Secreted Aspartic Proteases  Margarete Borg-von Zepelin,
GFP Chlorophyll Merged A B C D
2-4 Chemical Reactions and Enzymes p50
Jacqueline L. Blankman, Gabriel M. Simon, Benjamin F. Cravatt 
Volume 99, Issue 5, Pages (September 2010)
Solution Structure of the U11-48K CHHC Zinc-Finger Domain that Specifically Binds the 5′ Splice Site of U12-Type Introns  Henning Tidow, Antonina Andreeva,
Verena Hoerr, Armin Purea, Cornelius Faber  Biophysical Journal 
Keratinocyte-Specific Mesotrypsin Contributes to the Desquamation Process via Kallikrein Activation and LEKTI Degradation  Masashi Miyai, Yuuko Matsumoto,
Amino Acids An amino acid is any compound that contains an amino group (—NH2) and a carboxyl group (—COOH) in the same molecule.
Activation of the Bacterial Sensor Kinase PhoQ by Acidic pH
Enzymes and Chemical Reactions
Biomolecules Enzymes.
Volume 24, Issue 4, Pages (April 2016)
Volume 15, Issue 4, Pages (April 2008)
Volume 9, Issue 1, Pages (January 2002)
HeLa COS-7 Supplementary Figure S1 Coelho et al (2014) MM pSPL3 MM
Enzymes Biological catalyst – it speeds up reactions without being permanently changed.
Covalent Protein Labeling at Glutamic Acids
An Electrophoretic Mobility Shift Assay Identifies a Mechanistically Unique Inhibitor of Protein Sumoylation  Yeong Sang Kim, Katelyn Nagy, Samantha Keyser,
Volume 16, Issue 9, Pages (September 2009)
Volume 6, Issue 4, Pages (October 2000)
Enzymes.
Chemical Reactions and Enzymes
Transport of Biotin in Human Keratinocytes
Enzymes and Chemical Reactions
ZFAND5 stimulates proteasomes and promotes overall protein degradation in MEF, HeLa, and HEK293 cells. ZFAND5 stimulates proteasomes and promotes overall.
A Skin-Like Cytochrome P450 Cocktail Activates Prohaptens to Contact Allergenic Metabolites  Moa Andresen Bergström, Hagen Ott, Anna Carlsson, Mark Neis,
Parallel Molecular Pathways Mediate Expression of Distinct Forms of Intermediate-Term Facilitation at Tail Sensory–Motor Synapses in Aplysia  Michael.
OGD treatment increased tonic current through an oxidative reaction.
Volume 112, Issue 8, Pages (April 2017)
**** *** * **** **** *** Shahriary et al.- Supplementary Figure 4 (a)
Presentation transcript:

Supplementary data/figures Khanim et al

Supplementary Figure 1 Figure 1A: Schematic of the two-step fluorescent NADPH assay used for identifying compounds with AKR1C inhibitory activity Figure 1B: Phenanthrenequinone (PQ) is a very stable non-limiting substrate for identification of inhibitors of AKR enzymes. 15 μg recombinant AKR1C3 protein was incubated in 50mM potassium phosphate buffer (pH 6.5) and 20μM PQ at 35°and OD340nm measured following the addition of β-NADPH. The product appears to spontaneously oxidise back to PQ because the initial rate of NADPH consumption was restored when fresh NADPH was added to the assay after 20mins (arrowheads). In these assays, NADPH was added in excess compared to PQ at each time-point. NADPH

Supplementary Figure 2; Structure of AKR1C3 selective NCI compounds NSC NSC NSC NSC

A1 (CRT ) 3-(3,4-Dihydro-1H-isoquinoline-2-sulfonyl)-benzoic acid A6 (CRT ) 1-[4-(2-Methyl-piperidine-1-sulfonyl)-phenyl]-pyrrolidin-2-one A9 (CRT ) [4-(4-Chloro-phenyl)-piperazin-1-yl]-morpholin-4-yl-methanone Supplementary Figure 3; Structure of AKR1C3 selective CRT compounds

Supplementary Table 1: Chemical Shift of A in DMSO

Supplementary Table 2: Chemical Shift of B in DMSO

To confirm that N(CH 3 ) 2 group is only present in A but not B, 15 N HSQC and long range 15 N HSQC were conducted. For A, we identified the NH 2 group in 15 N HSQC and both NH 2 and N(CH 3 ) 2 groups in the long range 15 N HSQC (Table 3) whereas for B, only the NH 2 group was identified regardless of whether we conduct a normal or long range 15 N HSQC. Furthermore, additional resonances in 13 C HSQC matched well the methyl group identified in the 13 C direct observed experiment of B. To confirm that bond shift rearrangement that altered A into B, 13 C HSQC was conducted. The CH group signatures at position 4 and 4a of A were completely absent in B. Table 3: 15 N Chemical Shift of A 15 N δ in ppmAssignment 105.1NH N Supplementary Table 3: 15 N Chemical Shift of A