Number of gene productsIn this taxonAnnotated to this GO term directly or indirectly 2Mammalsphotosynthesis 5Mammalsmale germ-line cyst formation 14non-Arthropodshemocyte.

Slides:



Advertisements
Similar presentations
Judith A. Blake, David P. Hill, Barry Smith BioOntologies SIG: Vienna July 20, 2007 Gene Ontology Annotations: What they mean and where they come from.
Advertisements

Applications of GO. Goals of Gene Ontology Project.
Annotating Gene Products to the GO Harold J Drabkin Senior Scientific Curator The Jackson Laboratory Mouse.
Life Cycles: Meiosis and the Alternation of Generations
Gene function analysis Stem Cell Network Microarray Course, Unit 5 May 2007.
ICS 324 Students Marks and Grades
Pathway and network analysis Functional interpretation of gene lists
BICH CACAO Biocurator Training Session #3.
Developmental Genetics. Three Stages of Development division morphogenesis differentiation.
Gene Ontology at WormBase: Making the Most of GO Annotations Kimberly Van Auken.
Stem Cell Basics Unspecialized (undifferentiated) cells.
PAT project Advanced bioinformatics tools for analyzing the Arabidopsis genome Proteins of Arabidopsis thaliana (PAT) & Gene Ontology (GO) Hongyu Zhang,
Multicellular Organisms. Tissue - a group of similar cells that together perform a specific function in an organism.
SPH 247 Statistical Analysis of Laboratory Data 1 May 12, 2015 SPH 247 Statistical Analysis of Laboratory Data.
Using The Gene Ontology: Gene Product Annotation.
Annotating Gene Products to the GO Harold J Drabkin Senior Scientific Curator The Jackson Laboratory Mouse.
Introduction to GO Annotation Eurie Hong (SGD), Michelle Gwinn (TIGR), Tanya Berardini (TAIR), Karen Pilcher (DictyBase), Russell Collins (FlyBase), Carol.
Reproduction and Meiosis. Asexual organisms reproduce differently than sexual organisms. As multi-cellular organisms develop, their cells differentiate.
SPH 247 Statistical Analysis of Laboratory Data 1May 14, 2013SPH 247 Statistical Analysis of Laboratory Data.
Gene Expression Control of Gene Expression Activation of a gene that results in the formation of a _________. When transcription occurs a gene is “__________”
From Functional Genomics to Physiological Model: Using the Gene Ontology Fiona McCarthy, Shane Burgess, Susan Bridges The AgBase Databases, Institute of.
Manual GO annotation Evidence: Source AnnotationsProteins IEA:Total Manual: Total
Introduction to the GO: a user’s guide Iowa State Workshop 11 June 2009.
SRI International Bioinformatics 1 Submitting pathway to MetaCyc Ron Caspi.
24th Feb 2006 Jane Lomax GO Further. 24th Feb 2006 Jane Lomax GO annotations Where do the links between genes and GO terms come from?
Gene Product Annotation using the GO ml Harold J Drabkin Senior Scientific Curator The Jackson Laboratory.
Production Priorities. Genome protein sets User Support Production systems change Database changes On-the-fly species gene associations.
Alastair Kerr, Ph.D. WTCCB Bioinformatics Core An introduction to DNA and Protein Sequence Databases.
Getting Started: a user’s guide to the GO GO Workshop 3-6 August 2010.
Functional Annotation and Functional Enrichment. Annotation Structural Annotation – defining the boundaries of features of interest (coding regions, regulatory.
1 Gene function annotation. 2 Outline  Functional annotation  Controlled vocabularies  Functional annotation at TAIR  Resources and tools at TAIR.
Getting Started: a user’s guide to the GO TAMU GO Workshop 17 May 2010.
What is a homologous chromosome?
DO NOW – 2/15/08 Complete the two Dihybrid crosses on eye color and widow’s peak. Report the phenotypic ratios in your DO NOW.
Introduction to the GO: a user’s guide NCSU GO Workshop 29 October 2009.
Update Susan Bridges, Fiona McCarthy, Shane Burgess NRI
Last Week in…. We discussed the different forms of Reproduction We discussed the costs/benefits of each form This week we’ll discuss sexual differentiation.
1 Annotation EPP 245/298 Statistical Analysis of Laboratory Data.
Chapter 7 Section 2: Sexual Reproduction Grade 10 Biology Fall 2010.
Meiosis and Sexual Reproduction Section 1 Section 2 Meiosis Sexual Reproduction.
Getting GO: how to get GO for functional modeling Iowa State Workshop 11 June 2009.
MEIOSIS AND SEXUAL LIFE CYCLES CHAPTER 13. REPRODUCTION Asexual reproduction – single parent passes on all of its genes to its offspring Sexual reproduction.
Sexual reproduction Life cycles and the alternation of generations.
. Pollen is the male gametophyte of seed plants. Both gymnosperms (cone- bearing plants) and angiosperms (flowering plants) produce pollen as part of.
AP BIO BR 1/24 Question: Reproduction in Prokaryotes (bacteria) and Protists is referred to as Binary Fission. In no more than three sentences, describe.
Characteristics of Life
Introduction to Meiosis Asexual vs. Sexual Reproduction Various Different Sexual Life Cycles Chapter Pgs Objective: I can explain.
Extracting Biological Information from Gene Lists
Annotating with GO: an overview
Introduction to the Gene Ontology
Sexual Differentiation Lesson
MEIOSIS Creating gametes (sex cells).
Organismal Development Part 2
الاسبوع الإرشادي.
The great variety of possible gene combinations in a
Gene expression analysis
TITLE TITLE TITLE TITLE
Organismal Development Part 2
Biology- study of life Organism- living thing
Instructions AISGSC 2019 Dear author(s),
Section 3: Multicellular Life Cycles
Insight into GO and GOA Angelica Tulipano , INFN Bari CNR
Engine Part ID Part 1.
Organismal Development Part 2
Engine Part ID Part 2.
Engine Part ID Part 2.
Last Week in…. Adventures in Biology...
EXP file structure.
Introduction to Plant Reproduction
Key Ideas What is a diploid life cycle? What is a haploid life cycle?
Presentation transcript:

Number of gene productsIn this taxonAnnotated to this GO term directly or indirectly 2Mammalsphotosynthesis 5Mammalsmale germ-line cyst formation 14non-Arthropodshemocyte differentiation 2123non-Eukaryotesmulticellular organismal process 12919non-Eukaryotesnucleus 5Dictyosteliumgametophyte development 2290non-Virusesviral reproduction 1Mammalscompound eye development 27non-Mammalslactation 2Mammalsfat body development

Number of gene products In this taxonAnnotated to this GO term directly or indirectly literature/ exp ISS/RCAIEAother 2Mammalsphotosynthesis2 5Mammalsmale germ-line cyst formation1 IMP1 ISS3 14non-Arthropodshemocyte differentiation1 IEP6 ISS7 TAS 2123non-Eukaryotesmulticellular organismal process7 IDA10 ISS20925 NAS, 9 TAS 12919non-Eukaryotesnucleus Dictyosteliumgametophyte development5 2290non-Virusesviral reproduction1 IC, 54 IDA, 30 IMP 554 ISS, 8 RCA NAS, 71 TAS 1Mammalscompound eye development1RCA 27non-Mammalslactation3 ISS24 2Mammalsfat body development1 ISS1 NR

File Format GO termGO:idrelationshiptaxon nametaxon id photosynthesisGO: never_in_taxonMammaliaTaxonomy ID: male germ-line cyst formationGO: never_in_taxonMammaliaTaxonomy ID: hemocyte differentiationGO: never_outside_taxonArthropodaTaxonomy ID: 6656 multicellular organismal processGO: never_outside_taxonEukaryotaTaxonomy ID: 2759 nucleusGO: never_outside_taxonEukaryotaTaxonomy ID: 2759 gametophyte developmentGO: never_in_taxonDictyosteliumTaxonomy ID: 5782 viral reproductionGO: never_outside_taxonVirusesTaxonomy ID: compund eye developmentGO: never_in_taxonMammaliaTaxonomy ID: lactationGO: never_outside_taxonMammaliaTaxonomy ID: fat body developmentGO: never_in_taxonMammaliaTaxonomy ID: 40674