High Risk 1. Ensure productive use of GRID computing through participation of biologists to shape the development of the GRID. 2. Develop user-friendly.

Slides:



Advertisements
Similar presentations
21 st Century Science and Education for Global Economic Competition William Y.B. Chang Director, NSF Beijing Office NATIONAL SCIENCE FOUNDATION.
Advertisements

NA-MIC National Alliance for Medical Image Computing National Alliance for Medical Image Computing: NAMIC Ron Kikinis, M.D.
Joint CASC/CCI Workshop Report Strategic and Tactical Recommendations EDUCAUSE Campus Cyberinfrastructure Working Group Coalition for Academic Scientific.
U.S. Department of Energy’s Office of Science Basic Energy Sciences Advisory Committee Dr. Daniel A. Hitchcock October 21, 2003
Presentation at WebEx Meeting June 15,  Context  Challenge  Anticipated Outcomes  Framework  Timeline & Guidance  Comment and Questions.
Priority Research Direction: Portable de facto standard software frameworks Key challenges Establish forums for multi-institutional discussions. Define.
Funding Opportunities at NSF Jane Silverthorne International Arabidopsis Consortium Workshop January 15, 2011.
1 Cyberinfrastructure Framework for 21st Century Science & Engineering (CF21) IRNC Kick-Off Workshop July 13,
Overview of Biomedical Informatics Rakesh Nagarajan.
Jeffery Loo NLM Associate Fellow ’03 – ’05 chemicalinformaticsforlibraries.
1 Intellectual Architecture Leverage existing domain research strengths and organize around multidisciplinary challenges Institute for Computational Research.
Western Regional Biomedical Collaboratory Creating a culture for collaboration.
Fungal Semantic Web Stephen Scott, Scott Henninger, Leen-Kiat Soh (CSE) Etsuko Moriyama, Ken Nickerson, Audrey Atkin (Biological Sciences) Steve Harris.
NICLS: Development of Biomedical Computing and Information Technology Infrastructure Presented by Simon Sherman August 15, 2005.
1 The Red Team Gwen Jacobs Ed Lazowska. 2 What biologists want … z Can I evaluate an experimental design? z Can I store the results? z Can I visualize.
Center for the Study of Digital Libraries Texas A&M University College Station, TX.
Data Sources & Using VIVO Data Visualizing Scholarship VIVO provides network analysis and visualization tools to maximize the benefits afforded by the.
What is “Biomedical Informatics”?. Biomedical Informatics Biomedical informatics (BMI) is the interdisciplinary field that studies and pursues.
Advanced Data Mining and Integration Research for Europe ADMIRE – Framework 7 ICT ADMIRE Overview European Commission 7 th.
BIOCMS: Resource Integration and Web Application Framework for Bioinformatics DHUNDY R BASTOLA †, *, ANIL KHADKA †, MOHAMMAD SHAFIULLAH † AND HESHAM ALI.
Vivien Bonazzi Ph.D. Program Director: Computational Biology (NHGRI) Co Chair Software Methods & Systems (BD2K) Biomedical Big Data Initiative (BD2K)
Science of Learning Centers Soo-Siang Lim Ph.D Director and Chair of Coordinating Committee Science of Learning Centers Program National Science Foundation.
Annual SERC Research Review - Student Presentation, October 5-6, Extending Model Based System Engineering to Utilize 3D Virtual Environments Peter.
1 Building National Cyberinfrastructure Alan Blatecky Office of Cyberinfrastructure EPSCoR Meeting May 21,
RDA Wheat Data Interoperability Working Group Outcomes RDA Outputs P5 9 th March 2015, San Diego.
The NIH Bioinformatics and Computational Biology Roadmap Eric Jakobsson Chair, NIH Bioinformation Science and Technology Initiative Consortium Director,
Computing in Atmospheric Sciences Workshop: 2003 Challenges of Cyberinfrastructure Alan Blatecky Executive Director San Diego Supercomputer Center.
European Life Sciences Infrastructure for Biological Information ELIXIR
Bioinformatics Education: Training a New Generation of Professionals Patricia Dombrowski May 2005.
. Traffic Flow Management System Benefits Flexibility for Future Growth: TFMS provides a modern software architecture to meet future growth and support.
Funding Opportunities for GI Science at National Science Foundation Nina Lam 02/04/00.
Building Biodiversity Information Education: Next Generation Bioinformaticians P. Bryan Heidorn Carole Palmer Dan Wright Graduate School of Library and.
Using the Open Metadata Registry (openMDR) to create Data Sharing Interfaces October 14 th, 2010 David Ervin & Rakesh Dhaval, Center for IT Innovations.
Department of Health and Human Services National Institutes of Health National Center for Research Resources Division of Research Infrastructure Extending.
NIH Big Data to Knowledge (BD2K) March 4, 2014 Peter Lyster National Institute of General Medical Sciences (NIGMS) NIH.
From GEANT to Grid empowered Research Infrastructures ANTONELLA KARLSON DG INFSO Research Infrastructures Grids Information Day 25 March 2003 From GEANT.
The iPlant Collaborative Community Cyberinfrastructure for Life Science Tools and Services Workshop Objectives.
March 26-28, 2013 SINGAPORE CDIO Asian Regional Meeting and Workshop on Engineering Education and Policies for Regional Leaders Programme Evaluation (CDIO.
The NIH Bioinformatics and Computational Biology Roadmap Eric Jakobsson Chair, NIH Bioinformation Science and Technology Initiative Consortium Director,
Chapter 13 Management of Information in Healthcare Organizations.
Facilitate Scientific Data Sharing by Sharing Informatics Tools and Standards Belinda Seto and James Luo National Institute of Biomedical Imaging and Bioengineering.
UNESCO/IFLA School Library Manifesto SOURCE braries/manifestos/school_manife sto.htm.
GBIF Mid Term Meetings 2011 Biodiversity Data Portals for GBIF Participants: The NPT Global Biodiversity Information Facility (GBIF) 3 rd May 2011.
Grid Computing & Semantic Web. Grid Computing Proposed with the idea of electric power grid; Aims at integrating large-scale (global scale) computing.
NA-MIC National Alliance for Medical Image Computing UCSD: Engineering Core 2 Portal and Grid Infrastructure.
BalticGrid-II Project BalticGrid-II Kick-off Meeting, , Vilnius1 Joint Research Activity Enhanced Application Services on Sustainable e-Infrastructure.
ICCS WSES BOF Discussion. Possible Topics Scientific workflows and Grid infrastructure Utilization of computing resources in scientific workflows; Virtual.
Cyberinfrastructure What is it? Russ Hobby Internet2 Joint Techs, 18 July 2007.
Valentina Di Francesco Senior Program Officer for Bioinformatics, Structural Genomics and Systems Biology Microbial Genomics.
Ruth Pordes November 2004TeraGrid GIG Site Review1 TeraGrid and Open Science Grid Ruth Pordes, Fermilab representing the Open Science.
Cooperative experiments in VL-e: from scientific workflows to knowledge sharing Z.Zhao (1) V. Guevara( 1) A. Wibisono(1) A. Belloum(1) M. Bubak(1,2) B.
August 3, March, The AC3 GRID An investment in the future of Atlantic Canadian R&D Infrastructure Dr. Virendra C. Bhavsar UNB, Fredericton.
Bioinformatics Curriculum Issues, goals, curriculum.
Computational Science & Engineering meeting national needs Steven F. Ashby SIAG-CSE Chair March 24, 2003.
Cyberinfrastructure: Many Things to Many People Russ Hobby Program Manager Internet2.
South and East Africa Regional Working Group. Charge to Regional Working Groups Each Regional Group identifies: Strengths – Gaps –Opportunities, towards.
NIH and the Clinical Research Enterprise Third Annual Medical Research Summit March 6, 2003 Mary S. McCabe National Institute of Health.
NSF Middleware Initiative Purpose To design, develop, deploy and support a set of reusable, expandable set of middleware functions and services that benefit.
1 e-Arts and Humanities Scoping an e-Science Agenda Sheila Anderson Arts and Humanities Data Service Arts and Humanities e-Science Support Centre King’s.
VLDATA Common solution for the (very-)large data challenge EINFRA-1, focus on topics (4) & (5)
Erwin Laure ScalaLife Project Director.
Social and Personal Factors in Semantic Infusion Projects Patrick West 1 Peter Fox 1 Deborah McGuinness 1,2
Data Infrastructure Building Blocks (DIBBS) NSF Solicitation Webinar -- March 3, 2016 Amy Walton, Program Director Advanced Cyberinfrastructure.
All Hands Meeting 2005 BIRN-CC: Building, Maintaining and Maturing a National Information Infrastructure to Enable and Advance Biomedical Research.
Northwest Indiana Computational Grid Preston Smith Rosen Center for Advanced Computing Purdue University - West Lafayette West Lafayette Calumet.
Learning Routes A Tool to Disseminate and Scale Up Innovations – Asia, Africa, Latin America and the Caribbean.
Data Sources & Using VIVO Data Visualizing Science VIVO provides network analysis and visualization tools to maximize the benefits afforded by the data.
Towards a unified MOD resource: An Overview
KnowEnG: A SCALABLE KNOWLEDGE ENGINE FOR LARGE SCALE GENOMIC DATA
Similarities between Grid-enabled Medical and Engineering Applications
Presentation transcript:

High Risk 1. Ensure productive use of GRID computing through participation of biologists to shape the development of the GRID. 2. Develop user-friendly software for biologists to benefit from appropriate applications that utilize the GRID. 3. Integrate key building blocks into a framework for the ultimate biomedical computing environment. 1. Deploy a rigorous biomedical computing environment to analyze, model, understand, and predict dynamic and complex biomedical systems across scales and to integrate data and knowledge at all levels of organization. Medium Risk 1. Support Center infrastructure grants that include key building blocks of the ultimate biomedical computing environment, such as: integration of data and models across domains, scalability, algorithm development and enhancement, incorporation of best software engineering practices, usability for biology researchers and educators, and integration of data, simulations, and validation. 2. Develop biomedical computing as a discipline at academic institutions. 3. Develop methods by which NIH sets priorities and funding options for supporting and maintaining databases. 4. Develop a prototype high-throughput global search and analysis system that integrates genomic and other biomedical databases. 1. Develop robust computational tools and methods for interoperation between biomedical databases and tools across platforms and for collection, modeling, and analyzing of data, and for distributing models, data, and other information. 2. Rebuild languages and representations (such as Systems Biology Markup Language) for higher level function. 1. Produce and disseminate professional-grade, state-of-the art, interoperable informatics and computational tools to biomedical communities. As a corollary, provide extensive training and feedback opportunities in the use of the tools to the members of those communities. Low Risk 1. Develop vocabularies, ontologies, and data schema for defined domains and develop prototype databases based on those vocabularies, ontologies, and data schema 2. Require that NIH-supported software development be open source. 3. Require that data generated in NIH-supported projects be shared in a timely way. 4. Create a high-prestige grant award to encourage research in biomedical computing. 5. Provide support for innovative curriculum development in biomedical computing 6. Support workshops to test different methods or algorithms to analyze the same data or solve the same problem. 7. Identify existing best practice/gold standard bioinformatics and computational biology products and projects that should be sustained and enhanced. 8. Enhance training opportunities in bioinformatics and biomedical computing. 1. Supplement existing national or regional high-performance computing facilities to enable biomedical researchers to make optimal use of them. 2. Develop and make accessible databases based on domain-specific vocabularies, ontologies, and data schema. 3. Harden, build user interfaces for, and deploy on the national grid, high- throughput global search and analysis systems integrating genomic and other biomedical databases. 1. Employ the skills of a new generation of multi-disciplinary biomedical computing scientists. 1-3 years4-7 years8-10 years TIME