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Racing Bacterial Cells in Microfluidic Gradients in order to measure chemotactic efficiency of isogenic bacteria population in correlation to their morphology.

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Presentation on theme: "Racing Bacterial Cells in Microfluidic Gradients in order to measure chemotactic efficiency of isogenic bacteria population in correlation to their morphology."— Presentation transcript:

1 Racing Bacterial Cells in Microfluidic Gradients in order to measure chemotactic efficiency of isogenic bacteria population in correlation to their morphology

2 Racing Bacterial Cells in Microfluidic Gradients in order to measure chemotactic efficiency of isogenic bacteria population in correlation to their morphology Why: Length variation is observed in isogenic bacteria population

3 Racing Bacterial Cells in Microfluidic Gradients in order to measure chemotactic efficiency of isogenic bacteria population in correlation to their morphology Why: Length variation is observed in isogenic bacteria population Does length variation have any functional role? → e.g. enhanced/diminshed motility?

4 Racing Bacterial Cells in Microfluidic Gradients in order to measure chemotactic efficiency of isogenic bacteria population in correlation to their morphology Why: Length variation is observed in isogenic bacteria population Does length variation have any functional role? → e.g. enhanced/diminshed motility? Aim: Physical model of how cell size and number of flagella relate to swimming speeds and efficiency in chemotaxis

5 How: Build microfluidics chamber using PDMS based soft-lithography

6 How: Build microfluidics chamber using PDMS based soft-lithography Create nutrition gradient in chamber to induce chemotaxis (adding sugar) → Quantitative measurement of gradient by adding dye in same conc. → Simulating gradient with physics modeling program chemoattractant bacteria

7 How: Build microfluidics chamber using PDMS based soft-lithography Create nutrition gradient in chamber to induce chemotaxis (adding sugar) → Quantitative measurement of gradient by adding dye in same conc. → Simulating gradient with physics modeling program Recording bacterias with DIC timelapse microscopy Identify single cells and measure their motion tracks (Matlab) as well as size chemoattractant bacteria

8 How: Build microfluidics chamber using PDMS based soft-lithography Create nutrition gradient in chamber to induce chemotaxis (adding sugar) → Quantitative measurement of gradient by adding dye in same conc. → Simulating gradient with physics modeling program Recording bacterias with DIC timelapse microscopy Identify single cells and measure their motion tracks (Matlab) as well as size

9 Build microfluidics chamber using PDMS based soft-lithography Create nutrition gradient in chamber to induce chemotaxis (adding sugar) → Quantitative measurement of gradient by adding dye in same conc. → Simulating gradient with physics modeling program Recording bacterias with DIC timelapse microscopy Identify single cells and measure their motion tracks (Matlab) as well as size ~1.5 µm thickness ~ 3 µm spacing

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11 Positions of tracked beads

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