1. Combining GATE and UIMA Ian Roberts

2. http://gate.ac.uk 2 Overview Introduction to UIMA Comparison with GATE Mapping annotations between GATE and UIMA Examples and demo

3. http://gate.ac.uk 3 What is UIMA? Language processing framework developed by IBM Similar document processing pipeline architecture to GATE Concentrates on performance and scalability Supports components written in different programming languages (currently Java and C++) Native support for distributed processing via web services

4. http://gate.ac.uk 4 UIMA Terminology Processing tasks in UIMA are encapsulated in Analysis Engines (AEs) Text-specific processing by Text Analysis Engines (TAEs) In UIMA, AEs can be primitive (~ a single PR in GATE terms), or aggregate (~ a GATE controller). –Aggregate AE can include other primitive or aggregate Aes GATE 3.1 includes interoperability layer to run –GATE controller as a primitive TAE in UIMA –UIMA TAE (primitive or aggregate) as a GATE PR

5. http://gate.ac.uk 5 UIMA and GATE In GATE, unit of processing is the Document –Text, plus features, plus annotations –Annotations can have arbitrary features, with any Java object as value In UIMA, unit of processing is (T)CAS (common analysis structure) –Text, plus Feature Structures –Annotations are just a special kind of FS, which includes start and end offset features

6. http://gate.ac.uk 6 Key Differences In GATE, annotations can have any features, with any values In UIMA, feature structures are strongly typed –Must declare what types of annotations are supported by each analysis engine –Must specify what features each annotation type supports –Must specify what type feature values may take Primitive types - string, integer, float Reference types - reference to another FS in the CAS Arrays of the above –All defined in XML descriptor for the AE

7. http://gate.ac.uk 7 Integrating GATE and UIMA So the problem is to map between the loosely-typed GATE world and the strongly- typed UIMA world Best explained by example…

8. http://gate.ac.uk 8 Example 1 Simple UIMA annotator that annotates each instance of the word “Goldfish” in a document. Does not need any input annotations Produces output annotations of type gate.example.Goldfish

9. http://gate.ac.uk 9 Example 1 This is a document that talks about Goldfish… Goldfish Create UIMA doc Copy annotations back GATE UIMA Annotator adds annotation of type gate.example.Goldfish Run UIMA annotator Add GATE annotation of type Goldfish at the corresponding place

10. http://gate.ac.uk 10 Example 2 We may want to copy annotations, as well as text, from the original GATE document. Consider a UIMA annotator that –takes gate.example.Sentence annotations as input –annotates “Goldfish” as before –also adds a feature GoldfishCount to each Sentence giving the number of goldfish annotations in that sentence

11. http://gate.ac.uk 11 This is a document that talks about Goldfish. Goldfish are easy to look after, and … Example 2 This is a document that talks about Goldfish. Goldfish are easy to look after, and … Create UIMA doc, with Sentence annotations Copy Goldfish annotations back… GATE UIMA Goldfish Run UIMA annotator, annotating Goldfish as before… …and adding a feature to each Sentence GoldfishCount = 1 Goldfish … and also want to copy new feature back to original Sentence s We need an index linking UIMA annotations to the GATE annotations they came from numFish = 1

12. http://gate.ac.uk 12 Defining the mapping The mapping must be defined by the user in XML <uimaAnnotation type="gate.example.Sentence" gateType="Sentence" indexed="true"/> For each GATE annotation of type Sentence … … create a UIMA annotation of this type at the same place… … and remember this mapping

13. http://gate.ac.uk 13 Defining the mapping (2) <uimaFSFeatureValue name="gate.example.Sentence:GoldfishCount" kind="int" /> For each UIMA annotation of this type…… create a GATE annotation at the same placeFor each UIMA annotation of this type…… find the GATE annotation it came from… … and set its numFish feature… … to the value of the GoldfishCount feature of the UIMA annotation.