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Sequencing the World of Possibilities for Energy & Environment The multi-laboratory project management The Global Project Tracking System Lukasz Szajkowski.

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Presentation on theme: "Sequencing the World of Possibilities for Energy & Environment The multi-laboratory project management The Global Project Tracking System Lukasz Szajkowski."— Presentation transcript:

1 Sequencing the World of Possibilities for Energy & Environment The multi-laboratory project management The Global Project Tracking System Lukasz Szajkowski 1, 3, Anuradha Padki 2, 3, Paola Pace 2, 3, Kristen M Taylor 1, 3, Leila A Hornick 2, 3, Greg M Werner 1, 3, Darren M Platt 1, 3 1. Lawrence Livermore National Laboratory 2. Lawrence Berkeley National Laboratory 3. DOE Joint Genome Institute (JGI)

2 Sequencing the World of Possibilities for Energy & Environment Agenda Sequencing process at the JGI Global Project Tracking System GPTS – technology GPTS Data and interface System Architecture Data exchange

3 Sequencing the World of Possibilities for Energy & Environment JGI – Joint Genome Institute Human Genome 19972007200520042003200220012006 1 22 6 12 ~25

4 Sequencing the World of Possibilities for Energy & Environment Sequencing process DNA/Library Annotation CSP Stanford LANL ORNL LLNL Assembly Users Sequencing Distribution JGI Users

5 Sequencing the World of Possibilities for Energy & Environment Sequencing process DNA/Library Annotation CSP Stanford LANL ORNL LLNL Assembly Users Sequencing Distribution Create library Venonat Twiki meetings emails Web pages ? JGI Users

6 Sequencing the World of Possibilities for Energy & Environment DNA/Library Anntotation Stanford LANL ORNL LLNL Assembly Users Sequencing Create library Venonat Twiki meetings emails Web pages ? Distribution CSP Sequencing process – black hole JGI Users

7 Sequencing the World of Possibilities for Energy & Environment Global Project Tracking System DNA/Library Annotation CSP GPTS Stanford LANL ORNL LLNL Assembly Users Distribution Create library Venonat Sequencing JGI

8 Sequencing the World of Possibilities for Energy & Environment GPTS – technology Three tier application Java Swing client + Java Web Start JavaServer Faces client SOAP + SSL between client and server Hibernate - Relational Persistence

9 Sequencing the World of Possibilities for Energy & Environment Projects Name, type Attributes Name, type ProjectData Value GPTS Data and interface

10 Sequencing the World of Possibilities for Energy & Environment GPTS Database :System GPTS Server :Component Hibernate Global Project Tracking System Projects Name, type Attributes Name, type ProjectData Value SOAP Attributes SOAP Projects SOAP ProjectData GPTS Kiwi :Component GPTS Web :Component SOAP :Interface SOAP Grum - Authorization :System SOAP System Architecture

11 Sequencing the World of Possibilities for Energy & Environment GPTS Database :System GPTS Server :Component Global Project Tracking System Projects Name, type Attributes Name, type ProjectData Value SOAP Attributes SOAP Projects SOAP ProjectData Grum - Authorization :System SOAP Hibernate System Architecture

12 Sequencing the World of Possibilities for Energy & Environment GPTS Database :System GPTS Server :Component Global Project Tracking System Projects Name, type Attributes Name, type ProjectData Value SOAP Attributes SOAP Projects SOAP ProjectData Grum - Authorization :System SOAP Hibernate System Architecture

13 Sequencing the World of Possibilities for Energy & Environment System Architecture

14 Sequencing the World of Possibilities for Energy & Environment GPTS Database :System GPTS Server :Component Global Project Tracking System Projects Name, type Attributes Name, type ProjectData Value SOAP Attributes SOAP Projects SOAP ProjectData Grum - Authorization :System SOAP Java Web Start Hibernate System Architecture

15 Sequencing the World of Possibilities for Energy & Environment GPTS UI

16 Sequencing the World of Possibilities for Energy & Environment JGI GPTS Database :System GPTS Server :Component Global Project Tracking System Projects Name, type Attributes Name, type ProjectData Value SOAP Attributes SOAP Projects SOAP ProjectData Grum - Authorization :System SOAP Stanford LANL ORNL LLNL Venonat Create library pipeline SOAP Hibernate Data exchange

17 Sequencing the World of Possibilities for Energy & Environment Future releases Filter sharing Email notification Data history Web reports Project status page Flexible API calls

18 Sequencing the World of Possibilities for Energy & Environment Acknowledgement GPTS Team Anu Padki Paola Pace Kristen Taylor Amber Shao Greg Werner Darren Platt Contact Lukasz Szajkowski szajkowski2@llnl.gov Very active users Lynne Goodwin David Bruce Harris Shapiro Fang Cheng Kerrie Barry Erika Lindquist

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