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Detecting Polymorphisms in Mouse Genome Phillip Tao Advisor: Eleazar Eskin Grad Student: Emrah Kostem.

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Presentation on theme: "Detecting Polymorphisms in Mouse Genome Phillip Tao Advisor: Eleazar Eskin Grad Student: Emrah Kostem."— Presentation transcript:

1 Detecting Polymorphisms in Mouse Genome Phillip Tao Advisor: Eleazar Eskin Grad Student: Emrah Kostem

2 Ruby on Rails Using Ruby on Rails to create web server MySQL to store data Display data gathered using BLAT

3 Pygr Python based tool for sequencing data Can compare two or more strains Tried using to find inversions Takes too long / too resource intensive

4 BLAT Similar in function to Pygr Significantly less memory intensive Will be used to find and map polymorphisms

5 Roadmap Significantly less progress than expected Web server mostly functional by January Winter quarter to map polymorphisms Spring quarter to use map of polymorphisms and predict phenotype


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