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DEPARTMENT OF NEUROLOGY GOVT MEDICAL COLLEGE, KOTA
NORMAL MRI BRAIN DR. PIYUSH OJHA DM RESIDENT DEPARTMENT OF NEUROLOGY GOVT MEDICAL COLLEGE, KOTA
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History: MRI 1940s – Bloch & Purcell: Nuclear Magnetic Resonance (Nobel Prize in 1952) Lauterbur: gradients for spatial localization of images (ZEUGMATOGRAPHY) 1977 – Mansfield: first image of human anatomy, first echo planar image 1990s - Discovery that MRI can be used to distinguish oxygenated blood from deoxygenated blood. Leads to Functional Magnetic Resonance imaging (fMRI) Paul Lauterbur and Peter Mansfield won the Nobel Prize in Physiology/Medicine (2003) for their pioneering work in MRI
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The first Human MRI scan was performed on 3rd july 1977 by Raymond Damadian, Minkoff and Goldsmith.
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MAGNETIC FIELD STRENGTH
S.I. unit of Magnetic Field is Tesla. Old unit was Gauss. 1 Tesla = 10,000 Gauss Earth’s Magnetic Field ~ 0.7 x 10(-4) Tesla Refrigerator Magnet ~ 5 x 10(-3) Tesla
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MRI MRI is based on the principle of nuclear magnetic resonance (NMR)
Two basic principles of NMR Atoms with an odd number of protons have spin A moving electric charge, be it positive or negative, produces a magnetic field Body has many such atoms that can act as good MR nuclei (1H, 13C, 19F, 23Na) MRI utilizes this magnetic spin property of protons of hydrogen to produce images.
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Hydrogen nucleus has an unpaired proton which is positively charged
Hydrogen atom is the only major element in the body that is MR sensitive. Hydrogen is abundant in the body in the form of water and fat Essentially all MRI is hydrogen (proton 1H) imaging
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TR & TE TE (echo time) : time interval in which signals are measured after RF excitation TR (repetition time) : the time between two excitations is called repetition time. By varying the TR and TE one can obtain T1WI and T2WI. In general a short TR (<1000ms) and short TE (<45 ms) scan is T1WI. Long TR (>2000ms) and long TE (>45ms) scan is T2WI.
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BASIC MR BRAIN SEQUENCES
T1 T2 FLAIR DWI ADP MRA MRV MRS
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T1 W IMAGES SHORT TE SHORT TR BETTER ANATOMICAL DETAILS FLUID DARK
GRAY MATTER GRAY WHITE MATTER WHITE
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MOST PATHOLOGIES DARK ON T1 BRIGHT ON T1
Fat Haemorrhage Melanin Early Calcification Protein Contents (Colloid cyst/ Rathke cyst) Posterior Pituitary appears BRIGHT ON T1 Gadolinium
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T1 W IMAGES
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T2 W IMAGES LONG TE LONG TR BETTER PATHOLOGICAL DETAILS FLUID BRIGHT
GRAY MATTER RELATIVELY BRIGHT WHITE MATTER DARK
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T1W AND T2 W IMAGES
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FLAIR – Fluid Attenuated Inversion Recovery Sequences
LONG TE LONG TR SIMILAR TO T2 EXCEPT FREE WATER SUPRESSION (INVERSION RECOVERY) Most pathology is BRIGHT Especially good for lesions near ventricles or sulci (eg Multilpe Sclerosis)
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CT T1 T2 FLAIR
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T1W T2W FLAIR(T2) TR SHORT LONG TE CSF LOW HIGH FAT MEDIUM BRAIN EDEMA
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MRI BRAIN :AXIAL SECTIONS
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. Nasopharynx . Cervical Cord . Mandible . Maxillary Sinus
Post Contrast sagittal T1 Weighted M.R.I. Section at the level of Foramen Magnum . Cervical Cord Cisterna Magna . Mandible Post Contrast Axial MR Image of the brain
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Orbits Internal Jugular Vein Sigmoid Sinus Medulla Cerebellar Tonsil
Post Contrast sagittal T1 Wtd M.R.I. Section at the level of medulla Internal Jugular Vein Sigmoid Sinus Medulla Cerebellar Tonsil Post Contrast Axial MR Image of the brain
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Post Contrast sagittal T1 Wtd M.R.I. Section at the level of Pons
Cavernous Sinus ICA Basilar Artery Post Contrast sagittal T1 Wtd M.R.I. Section at the level of Pons Pons Temporal lobe IV Ventricle IAC Vermis MCP . Internal Carotid Artery Internal Auditory Canal Cerebellar Hemisphere Mastoid Sinus
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Middle Cerebral Artery
Orbits Frontal Lobe Midbrain Temporal Lobe Aqueduct of Sylvius Post Contrast sagittal T1 Wtd M.R.I. Section at the level of Mid Brain Occipital Lobe Middle Cerebral Artery Posterior Cerebral Artery Post Contrast Axial MR Image of the brain
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Sylvian Fissure Frontal lobe III Ventricle Temporal Lobe
Post Contrast sagittal T1 Wtd M.R.I. Section at the level of the III Ventricle Occipital Lobe Temporal Lobe Fig. 1.5 Post Contrast Axial MR Image of the brain
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. Putamen . Internal Cerebral Vein Frontal Lobe Frontal Horn
Caudate Nucleus . Putamen . Internal Cerebral Vein Internal Capsule Choroid Plexus Post Contrast sagittal T1 Wtd M.R.I. Section at the level of Thalamus Occipital Lobe Temp Lobe Thalamus Superior Sagittal Sinus Fig. 1.6 Post Contrast Axial MR Image of the brain
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Splenium of corpus callosum
Genu of corpus callosum Choroid plexus within the body of lateral ventricle Post Contrast sagittal T1 Wtd M.R.I. Section at the level of Corpus Callosum Splenium of corpus callosum
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Frontal Lobe Body of the Corpus Callosum Parietal Lobe
Post Contrast sagittal T1 Wtd M.R.I. Section at the level of Body of Corpus Callosum Parietal Lobe Post Contrast Axial MR Image of the brain
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Post Contrast sagittal T1 Wtd M.R.I. Section above the Corpus Callosum
Frontal Lobe Post Contrast sagittal T1 Wtd M.R.I. Section above the Corpus Callosum Parietal Lobe Post Contrast Axial MR Image of the brain
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MRI BRAIN :SAGITTAL SECTIONS
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White Matter Grey Matter
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Parietal Lobe White Matter Frontal Lobe Lateral Sulcus Occipital Lobe Temporal Lobe Grey Matter Cerebellum
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Gyri of cerebral cortex Sulci of cerebral Cortex Frontal Lobe Temporal Lobe Cerebellum
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Parietal Lobe Frontal Lobe Occipital Lobe Temporal Lobe Cerebellum
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Parietal Lobe Frontal Lobe Occipital Lobe Transverse sinus Orbit Cerebellar Hemisphere
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Precentral Sulcus Lateral Ventricle Occipital Lobe Optic Nerve Maxillary sinus
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Corpus callosum Thalamus Caudate Nucleus Tentorium Cerebell Pons Tongue
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Thalamus Genu of Corpus Callosum Splenium of Corpus callosum Hypophysis Midbrain Ethmoid air Cells Inferior nasal Concha Fourth Ventricle Pons
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Thalamus Body of corpus callosum Splenium of Corpus callosum Genu of corpus callosum Superior Colliculus Inferior Colliculus Nasal Nasal Septuml Pons Medulla
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Cingulate Gyrus Splenium of Corpus callosum Genu of corpus callosum Ethmoid air cells Fourth Ventricle Oral cavity
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Thalamus Corpus Callosum Parietal Lobe Occipital Lobe Frontal Lobe Maxillary Sinus Cerebellum
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Parietal Lobe Lateral Ventricle Occipital Lobe Cerebellum Frontal Lobe Temporal Lobe
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Parietal Lobe Frontal Lobe Middle Temporal Gyrus Lateral Sulcus Superior Temporal Gyrus External Auditory Meatus Inferior Temporal Gyrus
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Internal cerebral vein
Superior sagittal sinus . Bone Parietal lobe Inferior sagittal sinus Vein of Galen Corpus callosum Occipital lobe Mass intermedia of thalamus Straight sinus . Vermis Sphenoid Sinus . IV ventricle Cerebellar tonsil
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MRI BRAIN :CORONAL SECTIONS
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Superior Sagittal Sinus
Longitudinal Fissure Straight Sinus Sigmoid Sinus Vermis
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Lateral Ventricle, Occipital Horn Straight Sinus Cerebellum
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Arachnoid Villi Great Cerebral Vein Tentorium Cerebelli Falx Cerebri Lateral Ventricle Vermis of Cerebellum
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Splenium of Corpus callosum Posterior Cerebral Artery Superior Cerebellar Foramen Magnum Lateral Ventricle Internal Cerebral Vein Tentorium Cerebelli Fourth Ventricle
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Corpus Callosum Thalamus Pineal Gland Vertebral Artery Cingulate Gyrus Choroid Plexus Superior Colliculus Cerebral Aqueduct
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Insula Lateral Sulcus Cerebral Peduncle Olive Crus of Fornix Middle Cerebellar Peduncle
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Corpus Callosum Thalamus Cerebral Peduncle Parahippocampal gyrus Caudate Nucleus Third Ventricle Hippocampus Pons
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Lateral Ventricle Body of Fornix Third Ventricle Uncus of Temporal Lobe Hippocampus Temporal Horn of Lateral Ventricle
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Internal Capsule Caudate Nucleus Insula Lentiform Nucleus Optic Tract Hypothalamus Amygdala Parotid Gland
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Cingulate Gyrus Internal Capsule Caudate Nucleusa Lentiform Nucleus Optic Nerve Internal Carottid Artery Nasopharynx
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Superior Sagittal Sinus Longitudinal Fissure Genu Of Corpus Callosum Lateral Sulcus Temporal Lobe Parotid Gland
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Frontal Lobe Ethmoid Sinus Nasal Septum Nasal Turbinate Nasal Cavity Massetor Tongue
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Frontal Lobe Medial Rectus Superior Rectus Inferior Rectus Lateral Rectus Maxillary Sinus Inferior Turbinate Tooth
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Superior Sagittal Sinus
Grey Matter White Matter Eye Ball Maxillary Sinus Tongue
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Coronal Section of the Brain at the level of Pituitary gland
Frontal lobe Corpus callosum Frontal horn III Caudate nucleus Pituitary gland Optic nerve Pituitary stalk sp Internal carotid artery np Cavernous sinus Coronal Section of the Brain at the level of Pituitary gland Post Contrast Coronal T1 Weighted MRI
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FLAIR & STIR SEQUENCES
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Short TI inversion-recovery (STIR) sequence
In STIR sequences, an inversion-recovery pulse is used to null the signal from fat (180° RF Pulse). STIR sequences provide excellent depiction of bone marrow edema which may be the only indication of an occult fracture.
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FSE STIR Comparison of fast SE and STIR sequences for depiction of bone marrow edema
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Fluid-attenuated inversion recovery (FLAIR)
First described in 1992 and has become one of the corner stones of brain MR imaging protocols An IR sequence with a long TR and TE and an inversion time (TI) that is tailored to null the signal from CSF Nulled tissue remains dark and all other tissues have higher signal intensities.
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Most pathologic processes show increased SI on T2-WI, and the conspicuity of lesions that are located close to interfaces b/w brain parenchyma and CSF may be poor in conventional T2-WI sequences. FLAIR images are heavily T2-weighted with CSF signal suppression, highlights hyper-intense lesions and improves their conspicuity and detection, especially when located adjacent to CSF containing spaces
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Clinical Applications of FLAIR sequences:
Used to evaluate diseases affecting the brain parenchyma neighboring the CSF-containing spaces for eg: MS & other demyelinating disorders. Unfortunately, less sensitive for lesions involving the brainstem & cerebellum, owing to CSF pulsation artifacts Mesial temporal sclerosis (MTS) (thin section coronal FLAIR) Tuberous Sclerosis – for detection of Hamartomatous lesions. Helpful in evaluation of neonates with perinatal HIE.
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Embolic infarcts- Improved visualization
Chronic infarctions- typically dark with a rim of high signal. Bright peripheral zone corresponds to gliosis, which is well seen on FLAIR and may be used to distinguish old lacunar infarcts from dilated perivascular spaces.
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FLAIR T2 W
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WHICH SCAN BEST DEFINES THE ABNORMALITY
T1 W Images: Subacute Hemorrhage Fat-containing structures Anatomical Details T2 W Images: Edema Tumor Infarction Hemorrhage FLAIR Images: Edema, Periventricular lesion
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DIFFUSION WEIGHTED IMAGES (DWI)
Free water diffusion in the images is Dark (Normal) Acute stroke, cytotoxic edema causes decreased rate of water diffusion within the tissue i.e. Restricted Diffusion (due to inactivation of Na K Pump ) Increased intracellular water causes cell swelling
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Areas of restricted diffusion are BRIGHT.
Restricted diffusion occurs in Cytotoxic edema Ischemia (within minutes) Abscess
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Other Causes of Positive DWI
Bacterial abscess, Epidermoid Tumor Acute demyelination Acute Encephalitis CJD T2 shine through ( High ADC)
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T2 SHINE THROUGH Refers to high signal on DWI images that is not due to restricted diffusion, but rather to high T2 signal which 'shines through' to the DWI image. T2 shine through occurs because of long T2 decay time in some normal tissue. Most often seen with sub-acute infarctions, due to Vasogenic edema but can be seen in other pathologic abnormalities i.e epidermoid cyst.
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To confirm true restricted diffusion - compare the DWI image to the ADC.
In cases of true restricted diffusion, the region of increased DWI signal will demonstrate low signal on ADC. In contrast, in cases of T2 shine-through, the ADC will be normal or high signal.
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APPARENT DIFFUSION COEFFICIENT Sequences (ADC MAP)
Calculated by the software. Areas of restricted diffusion are dark Negative of DWI i.e. Restricted diffusion is bright on DWI, dark on ADC
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The ADC may be useful for estimating the lesion age and distinguishing acute from subacute DWI lesions. Acute ischemic lesions can be divided into Hyperacute lesions (low ADC and DWI-positive) and Subacute lesions (normalized ADC). Chronic lesions can be differentiated from acute lesions by normalization of ADC and DWI.
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Nonischemic causes for decreased ADC
Abscess Lymphoma and other tumors Multiple sclerosis Seizures Metabolic (Canavans Disease)
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DWI Sequence ADC Sequence
65 year male-Acute Rt ACA Infarct
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Clinical Uses of DWI & ADC in Ischemic Stroke
Hyperacute Stage:- within one hour minimal hyperintensity seen in DWI and ADC value decrease 30% or more below normal (Usually <50X10-4 mm2/sec) Acute Stage:- Hyperintensity in DWI and ADC value low but after 5-7days of episode ADC values increase and return to normal value (Pseudonormalization) Subacute to Chronic Stage:- ADC value are increased but hyperintensity still seen on DWI (T2 shine effect)
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POST CONTRAST (GADOLINIUM ENHANCED)
Post contrast images are always T1 W images Sensitive to presence of vascular or extravascular Gd Useful for visualization of: Normal vessels Vascular changes Disruption of blood-brain barrier
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MR ANGIOGRAPHY / VENOGRAPHY
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MR ANGIOGRAPHY TWO TYPES OF MR ANGIOGRAPHY CE (contrast-enhanced) MRA
Non-Contrast Enhanced MRA TOF (time-of-flight) MRA PC (phase contrast) MRA
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CE (CONTRAST ENHANCED) MRA
T1-shortening agent, Gadolinium, injected iv as contrast Gadolinium reduces T1 relaxation time When TR<<T1, minimal signal from background tissues Result is increased signal from Gd containing structures Faster gradients allow imaging in a single breathhold CAN BE USED FOR MRA, MRV FASTER (WITHIN SECONDS)
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TOF (TIME OF FLIGHT) MRA
Signal from movement of unsaturated blood converted into image No contrast agent injected Motion artifact Non-uniform blood signal 2D TOF- SENSITIVE TO SLOW FLOW – VENOGRAPHY 3D TOF- SENSITIVE TO HIGH FLOW – MR ANGIOGRAPHY
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PHASE CONTRAST (PC) MRA
Phase shifts in moving spins (i.e. blood) are measured Phase is proportional to velocity Allows quantification of blood flow and velocity velocity mapping possible USEFUL FOR CSF FLOW STUDIES (NPH) MR VENOGRAPHY
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Anterior Cerebral Artery
Middle Cerebral Artery Internal Carotid Artery Posterior Cerebral Artery Basilar Artery Superior Cerebellar Artery Vertebral Artery Anterior Inferior Cerebellar Artery Posterior Inferior Cerebellar Artery MR ANGIOGRAPHY
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Anterior Cerebral Artery
Middle Cerebral Artery Internal Carotid Artery Basilar Artery Posterior Cerebral Artery Vertebral Artery MR ANGIOGRAPHY
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MR VENOGRAPHY
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NORMAL MR VENOGRAPHY (Lateral View)
Superior Sagittal Sinus Straight Sinus Internal Cerebral Vein Confluence of Sinuses Vein of Galen Transverse Sinus Internal Jugular Vein Sigmoid Sinus NORMAL MR VENOGRAPHY (Lateral View)
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NORMAL MR VENOGRAPHY (Lateral View)
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GRE Sequences (GRADIENT RECALLED ECHO)
Form of T2-weighted image which is susceptible to iron, calcium or blood. Blood, bone, calcium appear dark Areas of blood often appears much larger than reality (BLOOMING) Useful for: Identification of haemorrhage / calcification Look for: DARK only
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Hemorrhage in right parietal lobe
FLAIR GRE Hemorrhage in right parietal lobe
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MR SPECTROSCOPY Non-invasive physiologic imaging of brain that measures relative levels of various tissue metabolites. Used to complement MRI in characterization of various tissues.
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NORMAL MR SPECTRUM
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Observable metabolites
Resonating Location ppm Normal function Increased Lipids 0.9 & 1.3 Cell membrane component Hypoxia, trauma, high grade neoplasia. Lactate 1.3 Denotes anaerobic glycolysis Hypoxia, stroke, necrosis, mitochondrial diseases, neoplasia, seizure Alanine 1.5 Amino acid Meningioma Acetate 1.9 Anabolic precursor Abscess , Neoplasia, Lipid increase in high-grade gliomas, meningiomas, demyelination, necrotic foci, and inborn errors of metabolism
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Glutamate , glutamine, GABA
Metabolite Location ppm Normal function Increased Decreased NAA 2 Nonspecific neuronal marker (Reference for chemical shift) Canavan’s disease Neuronal loss, stroke, dementia, AD, hypoxia, neoplasia, abscess Glutamate , glutamine, GABA Neurotransmitter Hypoxia, HE Hyponatremia Succinate 2.4 Part of TCA cycle Brain abscess Creatine 3.03 Cell energy marker (Reference for metabolite ratio) Trauma, hyperosmolar state Stroke, hypoxia, neoplasia NAA is the most prominent one in normal adult brain proton MRS and is used as a reference for determination of chemical shift and nonspecific neuronal marker. Normal absolute concentrations of NAA in the adult brain are generally in the range of 8 to 9 mmol/kg. NAA concentrations are decreased in many brain disorders, resulting in neuronal and axonal loss, such as in neurodegenerative diseases, stroke, brain tumors, epilepsy, and multiple sclerosis, but are increased in Canavan's disease Cr peak is an indirect indicator of brain intracellular energy stores, tends to be relatively constant in each tissue type in normal brain, mean absolute Cr concentration in normal adult brains of 7.49; reduced in all brain tumors, particularly malignant ones
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Marker of cell memb turnover Neoplasia, demyelination (MS)
Metabolite Location ppm Normal function Increased Decreased Choline 3.2 Marker of cell memb turnover Neoplasia, demyelination (MS) Hypomyelination Myoinositol 3.5 & 4 Astrocyte marker AD Demyelinating diseases Cho reflects cell membrane synthesis and Degradation. Processes resulting in hypercellularity (e.g., primary brain neoplasms or gliosis) or myelin breakdown (demyelinating diseases) lead to locally increased Cho concentration, whereas hypomyelinating diseases result in decreased Cho levels. Mean absolute Cho concentration in normal adult brain tissue of 1.32 Ig3 MI is believed to be a glial marker because it is present primarily in glial cells and is absent in neurons; abnormally increased in patients with demyelinating diseases and in those with Alzheimer's disease Lac levels in normal brain tissue are absent or extremely low (C0.5 Mmol/L), they are essentially undetectable on normal spectra. Found in anaerobic glycolysis, which may be seen with brain neoplasms, infarcts, hypoxia, metabolic disorders or seizure and accumulate within cysts or foci of necrosis.
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Metabolite ratios: Normal abnormal NAA/ Cr 2.0 <1.6 NAA/ Cho 1.6
<1.2 Cho/Cr 1.2 >1.5 Cho/NAA 0.8 >0.9 Myo/NAA 0.5 >0.8
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Demyelinating disease
MRS Inc Cho/Cr Myo/NAA Cho/NAA Dec NAA/Cr ± lipid/lactate Dec NAA/Cr Dec NAA/ Cho Inc Myo/NAA Dec NAA/Cr Inc acetate, succinate, amino acid, lactate Slightly inc Cho/ Cr Cho/NAA Normal Myo/NAA ± lipid/lactate Malignancy Demyelinating disease Pyogenic abscess Neuodegenerative Alzheimer
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MRS APPLICATION ICSOLs
Differentiate Neoplasms from Nonneoplastic Brain Masses Radiation Necrosis versus Recurrent Tumor Inborn Errors of Metabolism RESEARCH PURPOSE FOR NEURODEGENERATIVE DISEASES
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PERFUSION STUDIES Perfusion is the process of nutritive delivery of arterial blood to a capillary bed in the biological tissue Lower perfusion means that the tissue is not getting enough blood with oxygen and nutritive elements (ischemia) Higher perfusion means neoangiogenesis – increased capillary formation (e.g. tumor activity)
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APPLICATIONS OF PERFUSION IMAGING
Stroke Detection and assessment of ischemic stroke (Lower perfusion ) Tumors Diagnosis, staging, assessment of tumour grade and prognosis Treatment response Post treatment evaluation Prognosis of therapy effectiveness (Higher perfusion)
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REFERENCES CT and MRI of the whole body – John R Haaga (5th edition)
Osborne Brain : Imaging, Pathology and Anatomy Neurologic Clinics (Neuroimaging) : February 2009, volume 27 Bradley ‘s Neurology in Clinical Practice (6th edition) Adams and Victor’s: Principles of Neurology (10th edition) Understanding MRI : basic MR physics : Stuart Currie et al : BMJ 2012 Harrison’s textbook of Internal Medicine (18th edition)
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THANK YOU
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CRANIAL NERVES IMAGING
CISS / 3D FIESTA SEQUENCE Heavily T2 Wtd Sequences Allows much higher resolution and clearer imaging of tiny intracranial structures
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I AND II N III N V N VI N
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VII AND VIII N LOWER CRANIAL N
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TRIGEMINAL NEURALGIA
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MAGNETIZATION TRANSFER (MT) MRI
MT is a recently developed MR technique that alters contrast of tissue on the basis of macromolecular environments. MTC is most useful in two basic area, improving image contrast and tissue characterization. MT is accepted as an additional way to generate unique contrast in MRI that can be used to our advantage in a variety of clinical applications.
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GRADATION OF INTENSITY
IMAGING CT SCAN CSF Edema White Matter Gray Matter Blood Bone MRI T1 Cartilage Fat MRI T2 MRI T2 Flair
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