1. Human Genetics Integrative Bioinformatics using Cytoscape (and R2)

2. Human Genetics External data sources Statistical analysis Perl module AMC Plugin Canonical paths DB Patient data GEO arrays Wet-lab data Algorithms Data input interface Array data: Tumor and time series R2-array analysis interface Cytoscape interface

3. Human Genetics

4. Tf (green) and partners (red)

5. Human Genetics Filtering

6. Human Genetics Filtering

7. Human Genetics Coloring, layout

8. Human Genetics Tf and partners

9. Human Genetics Availability R2 –Available shortly through http://humangenetics-amc.nl –Keep yourself posted on http://groups.google.com/group/r2-announce

10. Human Genetics Acknowledgements Department of Human Genetics - Academic Medical Center Piet Molenaar Jan Koster Richard Volckmann Rogier Versteeg NBIC-Biorange programme Cytoscape community Cytoscape Consortium –UC San Diego –Institute for Systems Biology –Memorial Sloan-Kettering Cancer Center –Agilent Technologies –Unilever –UC San Francisco –University of Toronto –Institut Pasteur Any questions later on: p.molenaar@amc.uva.nl

11. Human Genetics

16. Timeseries in R2

17. Human Genetics

25. Not only multiplo

26. Human Genetics

31. Network inference: TF and GO analysis

32. Human Genetics