Presentation is loading. Please wait.

Presentation is loading. Please wait.

Figure S9. 65 genes classifying early and late acute and convalescent phases on HG-focus platform* Gene symbolGene title p value (Phases) Fold change (early.

Published byFrank O’Neal’ Modified over 8 years ago

Similar presentations

Presentation on theme: "Figure S9. 65 genes classifying early and late acute and convalescent phases on HG-focus platform* Gene symbolGene title p value (Phases) Fold change (early."— Presentation transcript:

1 Figure S9. 65 genes classifying early and late acute and convalescent phases on HG-focus platform* Gene symbolGene title p value (Phases) Fold change (early acute vs convalescent) Fold change (late acute vs convalescent) BIRC5baculoviral IAP repeat-containing 53.19E-411.140033.56459 BUB1budding uninhibited by benzimidazoles 1 homolog (yeast)7.16E-371.25334.73311 CACNA2D3calcium channel, voltage-dependent, alpha 2/delta subunit 33.39E-380.3935140.368638 CCL2chemokine (C-C motif) ligand 24.08E-2915.02941.44789 CCL8chemokine (C-C motif) ligand 88.67E-3320.55221.18127 CCNA2cyclin A28.60E-411.256124.1209 CCNB2cyclin B21.98E-381.244233.97997 CD1CCD1c molecule8.18E-420.4315980.469248 CD38CD38 molecule4.12E-402.930216.48604 CDC20cell division cycle 20 homolog (S. cerevisiae)5.06E-411.20264.40779 CDK1cyclin-dependent kinase 12.29E-371.132283.77973 CDKN1Ccyclin-dependent kinase inhibitor 1C (p57, Kip2)7.95E-292.884010.36381 CDKN3cyclin-dependent kinase inhibitor 32.74E-401.137274.94106 CKS2CDC28 protein kinase regulatory subunit 21.88E-351.569174.32119 CTSL1cathepsin L15.25E-283.567791.06798 CXCL10chemokine (C-X-C motif) ligand 104.31E-2324.11581.88478 EEF1B2eukaryotic translation elongation factor 1 beta 21.13E-330.3748450.847775 FABP5fatty acid binding protein 5 (psoriasis-associated)7.13E-391.179434.37363 FEN1flap structure-specific endonuclease 16.66E-371.087592.75672 GGH gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)2.34E-291.152654.35809 GINS2GINS complex subunit 2 (Psf2 homolog)8.24E-401.184583.23807 GMNNgeminin, DNA replication inhibitor2.56E-401.40734.70569 HERC5hect domain and RLD 51.80E-349.728651.62272 HESX1HESX homeobox 13.60E-325.174061.28515 HMMRhyaluronan-mediated motility receptor (RHAMM)1.26E-351.136782.9076 IFI27interferon, alpha-inducible protein 27077.471345.6986 IFI44interferon-induced protein 445.12E-315.979432.10563 IFI44Linterferon-induced protein 44-like1.22E-2911.59932.7425 IFIH1interferon induced with helicase C domain 12.80E-306.776741.70868 IFIT1interferon-induced protein with tetratricopeptide repeats 15.94E-2819.86792.25936 IFIT3interferon-induced protein with tetratricopeptide repeats 32.66E-2511.37161.64338 IFITM3interferon induced transmembrane protein 3 (1-8U)8.60E-334.429421.56196 IRF7interferon regulatory factor 77.95E-346.890591.81825 ISG15ISG15 ubiquitin-like modifier1.16E-3712.73792.52757 LAMP3lysosomal-associated membrane protein 31.42E-255.347511.31592 LGALS3BPlectin, galactoside-binding, soluble, 3 binding protein2.35E-315.721531.76915 MCM6minichromosome maintenance complex component 69.54E-371.096553.24522 MS4A4Amembrane-spanning 4-domains, subfamily A, member 47.39E-3011.11691.01111 MT2Ametallothionein 2A7.98E-384.525981.74406 MX1 myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)4.57E-418.890972.4788 MX2myxovirus (influenza virus) resistance 2 (mouse)4.61E-294.868561.11191 NCAPGnon-SMC condensin I complex, subunit G4.45E-371.109193.50261 NELL2NEL-like 2 (chicken)2.32E-350.2477360.44445 NME1non-metastatic cells 1, protein (NM23A) expressed in5.15E-320.7903392.20392 NUSAP1nucleolar and spindle associated protein 17.81E-411.392325.03253 OAS12',5'-oligoadenylate synthetase 1, 40/46kDa1.06E-367.422841.96153 OAS22'-5'-oligoadenylate synthetase 2, 69/71kDa7.74E-425.172591.93347 OAS32'-5'-oligoadenylate synthetase 3, 100kDa2.27E-327.125691.47893 OASL2'-5'-oligoadenylate synthetase-like1.65E-376.677321.65104 PBKPDZ binding kinase4.42E-321.12513.72316 PCNAproliferating cell nuclear antigen2.53E-391.493973.91554 PLSCR1phospholipid scramblase 18.26E-335.304751.67891 PTTG1pituitary tumor-transforming 12.87E-391.116193.9037 RRM2ribonucleotide reductase M21.40E-451.7692412.3397

2 Figure S9 Continued RTN1reticulon 16.90E-340.4246250.356484 SERPING1serpin peptidase inhibitor, clade G (C1 inhibitor), member 13.33E-3317.70292.44514 SIGLEC1sialic acid binding Ig-like lectin 1, sialoadhesin5.05E-346.013491.62277 STMN1stathmin 17.30E-380.9285952.48741 TNFSF10tumor necrosis factor (ligand) superfamily, member 102.32E-235.991271.28735 TOP2Atopoisomerase (DNA) II alpha 170kDa8.00E-371.178033.71157 TPX2TPX2, microtubule-associated, homolog (Xenopus laevis)1.75E-401.18553.35535 TYMSthymidylate synthetase01.630238.27557 UBE2Cubiquitin-conjugating enzyme E2C6.11E-391.298922.90361 USP18ubiquitin specific peptidase 181.92E-397.536832.22014 ZWINTZW10 interactor2.65E-411.281365.97258 *Symbols in red are phase classifiers found on both the HG-focus and HG-U133plus2 platforms.

Download ppt "Figure S9. 65 genes classifying early and late acute and convalescent phases on HG-focus platform* Gene symbolGene title p value (Phases) Fold change (early."

Similar presentations

Input IgG -LSD1 -HDAC1 Untreated SAHA LSD1 HDAC1 Input IgG -LSD1 -HDAC1 IP: (IB) Figure S1 Huang, Yi et al.

Input IgG -LSD1 -HDAC1 Untreated SAHA LSD1 HDAC1 Input IgG -LSD1 -HDAC1 IP: (IB) Figure S1 Huang, Yi et al.
Fc Receptors Oct. 28, 2009 Extra reading on web Daniel Conrad 423 MSB, 828-2311 I. CD23.

Fc Receptors Oct. 28, 2009 Extra reading on web Daniel Conrad 423 MSB, I. CD23.
1 Harvard Medical SchoolMassachusetts Institute of Technology Inferring Nonstationary Gene Networks from Temporal Gene Expression Data Hsun-Hsien Chang.

1 Harvard Medical SchoolMassachusetts Institute of Technology Inferring Nonstationary Gene Networks from Temporal Gene Expression Data Hsun-Hsien Chang.
L4 TB4 L7TB7 G1P3interferon, alpha-inducible protein (clone IFI-6-16) GZMAgranzyme A GZMBHuman serine protease-like protein mRNA, complete cds. DPTdermatopontin.

L4 TB4 L7TB7 G1P3interferon, alpha-inducible protein (clone IFI-6-16) GZMAgranzyme A GZMBHuman serine protease-like protein mRNA, complete cds. DPTdermatopontin.
Gene SymbolGene DescriptionFold Lna21-SP21-S RP2retinitis pigmentosa 2 (X-linked recessive)1.3-1.6 DDAH1dimethylarginine dimethylaminohydrolase 11.4-1.5.

Gene SymbolGene DescriptionFold Lna21-SP21-S RP2retinitis pigmentosa 2 (X-linked recessive) DDAH1dimethylarginine dimethylaminohydrolase
Transcription strategies of viruses

Transcription strategies of viruses
Vaccines and Antivirals. Clinical Use of Interferon Therefore they have been used in the treatment of cancers of various types. Therefore they have been.

Vaccines and Antivirals. Clinical Use of Interferon Therefore they have been used in the treatment of cancers of various types. Therefore they have been.
Signal Pathways in Eukaryotic Cells Overview. Lipid Soluble Hormones.

Signal Pathways in Eukaryotic Cells Overview. Lipid Soluble Hormones.
MCB 317 Genetics and Genomics MCB 317 Topic 10, part 3 A Story of Transcription.

MCB 317 Genetics and Genomics MCB 317 Topic 10, part 3 A Story of Transcription.
APOPTOSIS “Cell Death” By Brian Abadie, Emily Anderson, andJohn Ramsey.

APOPTOSIS “Cell Death” By Brian Abadie, Emily Anderson, andJohn Ramsey.
IGF in circulation The majority (> 75 %) exists as bound form –IGF binding proteins (IGFBPs) IGFBPs –6 proteins and several related proteins –Serum IGFBP.

IGF in circulation The majority (> 75 %) exists as bound form –IGF binding proteins (IGFBPs) IGFBPs –6 proteins and several related proteins –Serum IGFBP.
Unfected > Infected AnnotationAccession numberGOName and other namesRDiscussed CDC45-related proteinCU986535 apoptosis/cell cycle Cdc45l, Cdc451.11x Centrosomal.

Unfected > Infected AnnotationAccession numberGOName and other namesRDiscussed CDC45-related proteinCU apoptosis/cell cycle Cdc45l, Cdc451.11x Centrosomal.
Uninfected < Infected AnnotationAccession numberGOName and other namesRDiscussed Baculoviral IAP repeat-containing protein 7CU994887 apoptosis/cell cycle.

Uninfected < Infected AnnotationAccession numberGOName and other namesRDiscussed Baculoviral IAP repeat-containing protein 7CU apoptosis/cell cycle.
SIGNAL TRANSMISSION WITHIN THE CELL Nela Pavlíková

SIGNAL TRANSMISSION WITHIN THE CELL Nela Pavlíková
Function Enrichment Score Enrichment p- value % genes in group that are present # genes in list, in group type I interferon-mediated signaling pathway48.19181.18E-2133.333321.

Function Enrichment Score Enrichment p- value % genes in group that are present # genes in list, in group type I interferon-mediated signaling pathway E
SHC2416.58319p13.3 SHC (Src homology 2 domain containing) transforming protein 2 CDC34531.73319p13.3cell division cycle 34 GZMM544.03419p13.3granzyme M.

SHC p13.3 SHC (Src homology 2 domain containing) transforming protein 2 CDC p13.3cell division cycle 34 GZMM p13.3granzyme M.
L4 L7 TB4 TB7 Regulation of Genes Relevant to General Immune Response C6Complement component 6, facilitates clearance of antigen-antibody complexes C1RComplement.

L4 L7 TB4 TB7 Regulation of Genes Relevant to General Immune Response C6Complement component 6, facilitates clearance of antigen-antibody complexes C1RComplement.
免疫学信息网 Formation of pre-Replicative complex.

免疫学信息网 Formation of pre-Replicative complex.
-19.03.9hypothetical protein LOC554226LOC554226237794_at -8.33.9neurotrophic tyrosine kinase, receptor, type 3NTRK3206462_s_at -2.73.9nuclear receptor.

hypothetical protein LOC554226LOC _at neurotrophic tyrosine kinase, receptor, type 3NTRK _s_at nuclear receptor.
Gene SymbolGene Name Fold Difference 1 q-value (%) 2 NL BM? 3 NR2F1nuclear receptor subfamily 2, group F, member 111.95.28No SLC2A10solute carrier family.

Gene SymbolGene Name Fold Difference 1 q-value (%) 2 NL BM? 3 NR2F1nuclear receptor subfamily 2, group F, member No SLC2A10solute carrier family.

Similar presentations

Ads by Google