1. Data Loading into Ensembl Database TGAC Browser www.tgac-browser.tgac.ac.uk

2. Ensembl Core Schema Developed by Ensembl Team at EBI &Sanger Types – Core – Compara – Variation – Regulation Well established Polished www.tgac-browser.tgac.ac.uk

3. Ensembl Core Schema www.tgac-browser.tgac.ac.uk

4. Database information Track information www.tgac-browser.tgac.ac.uk meta_idspecies_idmeta_keymeta_value 11NameSpecies_name 21Version1.0 Ensembl Core Schema – Meta / Tracks

5. chromosomes/ scaffolds/ contigs/clones Coordinates information www.tgac-browser.tgac.ac.uk Coord_system Rank for main reference must be 0 Sequence level coord_system must contain word ‘sequence’ as attrib Ensembl Core Schema - Reference

6. chromosomes/scaffolds /contigs/clones Assembly information www.tgac-browser.tgac.ac.uk Ensembl Core Schema - Assembly

7. Ensembl Core Schema - Sequence Sequence www.tgac-browser.tgac.ac.uk

8. Ensembl Core Schema - Genes www.tgac-browser.tgac.ac.uk

9. Ensembl Core Schema - Transcript www.tgac-browser.tgac.ac.uk

10. Ensembl Core Schema – Alignment Feature EST/Alignment/SNPs/etc – dna_align_feature www.tgac-browser.tgac.ac.uk

11. Ensembl Core Schema http://www.ensembl.org/info/docs/api/core/core_schema.html www.tgac-browser.tgac.ac.uk

12. Ensembl Core Schema Thank you www.tgac-browser.tgac.ac.uk