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Advanced Search dbGaP Closed captioning: www.captionedtext.com and enter 2790039www.captionedtext.com The recording, will be on our YouTube channel in.

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Presentation on theme: "Advanced Search dbGaP Closed captioning: www.captionedtext.com and enter 2790039www.captionedtext.com The recording, will be on our YouTube channel in."— Presentation transcript:

1 Advanced Search dbGaP Closed captioning: www.captionedtext.com and enter 2790039www.captionedtext.com The recording, will be on our YouTube channel in the Webinars playlist: /user/NCBINLM/playlists Use the questions pod to ask questions when you think of them. Don’t wait until the end. Answers available after the webinar linked to our Webinars page: /home/coursesandwebinars.shtml /home/coursesandwebinars.shtml Materials / Q&A: http://1.usa.gov/21PKGWLhttp://1.usa.gov/21PKGWL 12/16/151

2 The Database of Genotypes and Phenotypes Human phenotype data and related individual-level molecular data / genotypes Data for more than than 1 million individuals across 645 studies Information about studies – individual level molecular and phenotype data – analysis results – medical images – general information about the study, – research protocols – questionnaires Molecular data types – Genotypes – Expression – Genomic Sequence – Epigenomic data – Somatic mutation – Microbiome Individual level data requires Controlled Access application and approval 12/16/152 https://dbgap.ncbi.nlm.nih.gov/aa/dbgap_request_process.pdf

3 dbGaP Homepage 12/16/15 www.ncbi.nlm.nih.gov/gap/ New faceted advanced search interface 3

4 Faceted Search Interface 12/16/154 /projects/gapsolr/facets.html Filter Studies Variables Phenotype Datasets Documents Molecular Datasets Analyses By Study Keyword search Disease Study Design Molecular Data Type Marker Sets Filter Studies Variables Phenotype Datasets Documents Molecular Datasets Analyses By Study Keyword search Disease Study Design Molecular Data Type Marker Sets Breadcrumbs show current query, click to remove Keyword search across all

5 Live Demonstrations 12/16/155 Written narrative available: http://1.usa.gov/21PKGWLhttp://1.usa.gov/21PKGWL

6 More Resources Additional Tools – Phenotype/genotype integrator /gap/phegeni /gap/phegeni – dbGaP data browser /gap/ddb/ (authorized access) /gap/ddb/ Documentation and Help – dbGaP Help Document /books/NBK3837/ /books/NBK3837/ FAQ /books/NBK5295/ /books/NBK5295/ Factsheet /pub/factsheets/Factsheet_dbGaP.pdf /pub/factsheets/Factsheet_dbGaP.pdf – YouTube Channel /ncbinlm /ncbinlm – NCBI Factsheets /pub/factsheets/README_factsheets /pub/factsheets/README_factsheets – NCBI Help Desk info@ncbi.nlm.nih.govinfo@ncbi.nlm.nih.gov – Webinars webinars@ncbi.nlm.nih.govwebinars@ncbi.nlm.nih.gov 12/16/156


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