1. Python is Awesome! (and cooler than R)

2. My Research

3. What I Do Generate DNA Sequences Align Sequences to Reference Find Deletions Plot On Secondary Structure Measure 3D Distances Plot On Tertiary Structure

4. Generate DNA Sequences 320 Lines

5. Align Sequences to Reference Bowtie

6. Find Deletions 370 Lines

7. Three Dimensional Distances 150 Lines

8. Plot On Secondary Structure 650 Lines

9. Plot On 3D Structure 50 Lines

10. Text Manipulation

11. Bad PDB File

12. Rows and Columns

13. The Code Separates by Rows Separates by Columns Execution: python editPDBFormat.py myPDBFile.pdb

14. Good PDB File

15. FASTA Files

16. FASTQ Files

17. Alignment Files

18. BLAST Output

20. Moral Formatted = Code-able – NCBI – ENSEMBL – PDB Automate! – Don’t do anything more than 3 times