1. PowerPoint ® Lecture Presentations prepared by Bradley W. Christian, McLennan Community College C H A P T E R © 2016 Pearson Education, Inc. The Microbial World and You 1

2. © 2016 Pearson Education, Inc.

3. Microbes in Our Lives Learning Objective 1-1List several ways in which microbes affect our lives.

4. © 2016 Pearson Education, Inc. Microbes in Our Lives Microorganisms are organisms that are too small to be seen with the unaided eye Microbes include bacteria, fungi, protozoa, microscopic algae, and viruses

5. © 2016 Pearson Education, Inc. Microbes in Our Lives A few are pathogenic (disease-producing) Decompose organic waste Generate oxygen by photosynthesis Produce chemical products such as ethanol, acetone, and vitamins Produce fermented foods such as vinegar, cheese, and bread Produce products used in manufacturing (e.g., cellulase) and disease treatment (e.g., insulin)

6. © 2016 Pearson Education, Inc. Designer Jeans: Made by Microbes? Denim fading: Trichoderma Cotton production: Gluconacetobacter Bleaching: mushroom peroxidase Indigo: Escherichia coli Plastic: bacterial polyhydroxyalkanoate

7. © 2016 Pearson Education, Inc. Applications of Microbiology 1.1

8. © 2016 Pearson Education, Inc. Applications of Microbiology 1.2

9. © 2016 Pearson Education, Inc. Microbes in Our Lives Knowledge of microorganisms allows humans to Prevent food spoilage Prevent disease Understand causes and transmission of disease to prevent epidemics

10. © 2016 Pearson Education, Inc. Check Your Understanding Describe some of the destructive and beneficial actions of microbes. 1-1

11. © 2016 Pearson Education, Inc. Naming and Classifying Microorganisms Learning Objectives 1-2 Recognize the system of scientific nomenclature that uses two names: a genus and a specific epithet. 1-3 Differentiate the major characteristics of each group of microorganisms. 1-4 List the three domains.

12. © 2016 Pearson Education, Inc. Naming and Classifying Microorganisms Carolus Linnaeus established the system of scientific nomenclature in 1735 Each organism has two names: the genus and the specific epithet

13. © 2016 Pearson Education, Inc. Nomenclature Scientific names Are italicized or underlined The genus is capitalized; the specific epithet is lowercase Are "Latinized" and used worldwide May be descriptive or honor a scientist

14. © 2016 Pearson Education, Inc. Nomenclature Escherichia coli Honors the discoverer, Theodor Escherich Describes the bacterium's habitat—the large intestine, or colon

15. © 2016 Pearson Education, Inc. Nomenclature Staphylococcus aureus Describes the clustered (staphylo-) spherical (coccus) cells Describes the gold-colored (aureus) colonies

16. © 2016 Pearson Education, Inc. Nomenclature After the first use, scientific names may be abbreviated with the first letter of the genus and the specific epithet: Escherichia coli and Staphylococcus aureus are found in the human body E. coli is found in the large intestine, and S. aureus is on skin

17. © 2016 Pearson Education, Inc. Check Your Understanding Distinguish a genus from a specific epithet. 1-2

18. © 2016 Pearson Education, Inc. Types of Microorganisms Bacteria Archaea Fungi Protozoa Algae Viruses Multicellular Animal Parasites

19. © 2016 Pearson Education, Inc. Figure 1.1 Types of microorganisms. Bacteria Food particle Sporangia Pseudopod HIVs CD4 + T cell

20. © 2016 Pearson Education, Inc. Bacteria Prokaryotes ”Prenucleus" Single-celled Peptidoglycan cell walls Divide via binary fission Derive nutrition from organic or inorganic chemicals or photosynthesis

21. © 2016 Pearson Education, Inc. Figure 1.1a Types of microorganisms. Bacteria

22. © 2016 Pearson Education, Inc. Archaea Prokaryotes Lack peptidoglycan cell walls Often live in extreme environments Include: Methanogens Extreme halophiles Extreme thermophiles

23. © 2016 Pearson Education, Inc. Fungi Eukaryotes Distinct nucleus Chitin cell walls Absorb organic chemicals for energy Yeasts are unicellular Molds and mushrooms are multicellular Molds consist of masses of mycelia, which are composed of filaments called hyphae

24. © 2016 Pearson Education, Inc. Figure 1.1b Types of microorganisms. Sporangia

25. © 2016 Pearson Education, Inc. Protozoa Eukaryotes Absorb or ingest organic chemicals May be motile via pseudopods, cilia, or flagella Free-living or parasitic (derive nutrients from a living host)

26. © 2016 Pearson Education, Inc. Figure 1.1c Types of microorganisms. Pseudopod Food particle

27. © 2016 Pearson Education, Inc. Algae Eukaryotes Cellulose cell walls Found in freshwater, saltwater, and soil Use photosynthesis for energy Produce oxygen and carbohydrates

28. © 2016 Pearson Education, Inc. Figure 1.1d Types of microorganisms.

29. © 2016 Pearson Education, Inc. Viruses Acellular Consist of DNA or RNA core Core is surrounded by a protein coat Coat may be enclosed in a lipid envelope Are replicated only when they are in a living host cell Inert outside living hosts

30. © 2016 Pearson Education, Inc. Figure 1.1e Types of microorganisms. CD4 + T cell HIVs

31. © 2016 Pearson Education, Inc. Multicellular Animal Parasites Eukaryotes Multicellular animals Not strictly microorganisms Parasitic flatworms and roundworms are called helminths Some microscopic stages in their life cycles

32. © 2016 Pearson Education, Inc. Check Your Understanding Which groups of microbes are prokaryotes? Which are eukaryotes? 1-3

33. © 2016 Pearson Education, Inc. Classification of Microorganisms Developed by Carl Woese Three domains based on cellular organization Bacteria Archaea Eukarya Protists Fungi Plants Animals

34. © 2016 Pearson Education, Inc. Figure 10.1 Three-Domain System.

35. © 2016 Pearson Education, Inc. Check Your Understanding What are the three domains? 1-4

36. © 2016 Pearson Education, Inc. A Brief History of Microbiology Learning Objectives 1-5Explain the importance of observations made by Hooke and van Leeuwenhoek. 1-6Compare spontaneous generation and biogenesis. 1-7Identify the contributions to microbiology made by Needham, Spallanzani, Virchow, and Pasteur.

37. © 2016 Pearson Education, Inc. The First Observations 1665: Robert Hooke reported that living things are composed of little boxes, or "cells" Marked the beginning of cell theory: All living things are composed of cells The first microbes were observed from 1623–1673 by Anton van Leeuwenhoek "Animalcules" viewed through magnifying lenses

38. © 2016 Pearson Education, Inc. Figure 1.2b Anton van Leeuwenhoek's microscopic observations. Lens Location of specimen on pin Specimen- positioning screw Focusing control Stage- positioning screw Microscope replica

39. © 2016 Pearson Education, Inc. Check Your Understanding What is the cell theory? 1-5

40. © 2016 Pearson Education, Inc. The Debate over Spontaneous Generation Spontaneous generation: the hypothesis that life arises from nonliving matter; a "vital force" is necessary for life Biogenesis: the hypothesis that living cells arise only from preexisting living cells

41. © 2016 Pearson Education, Inc. The Debate over Spontaneous Generation 1668: Francesco Redi filled jars with decaying meat ConditionsResults Jars covered with fine netNo maggots Open jarsMaggots appeared Sealed jarsNo maggots From where did the maggots come? What was the purpose of the sealed jars? Spontaneous generation or biogenesis?

42. © 2016 Pearson Education, Inc. ConditionsResults Nutrient broth heated, then placed in covered flask Microbial growth From where did the microbes come? Spontaneous generation or biogenesis? The Debate over Spontaneous Generation 1745: John Needham put boiled nutrient broth into covered flasks

43. © 2016 Pearson Education, Inc. ConditionsResults Nutrient broth placed in flask, sealed, then heated No microbial growth Spontaneous generation or biogenesis? The Debate over Spontaneous Generation 1765: Lazzaro Spallanzani boiled nutrient solutions in sealed flasks

44. © 2016 Pearson Education, Inc. The Theory of Biogenesis 1858: Rudolf Virchow said cells arise from preexisting cells

45. © 2016 Pearson Education, Inc. The Theory of Biogenesis 1861: Louis Pasteur demonstrated that microorganisms are present in the air ConditionsResults Nutrient broth placed in flask, heated, NOT sealed Microbial growth Nutrient broth placed in flask, heated, then immediately sealed No microbial growth Spontaneous generation or biogenesis?

46. © 2016 Pearson Education, Inc. The Theory of Biogenesis Pasteur also used S-shaped flasks Keep microbes out but let air in Broth in flasks showed no signs of life Neck of flask traps microbes Microorganisms originate in air or fluids, not mystical forces

47. © 2016 Pearson Education, Inc. Figure 1.3 Disproving the Theory of Spontaneous Generation.

48. © 2016 Pearson Education, Inc. Check Your Understanding What evidence supported spontaneous generation? 1-6 How was spontaneous generation disproved? 1-7

49. © 2016 Pearson Education, Inc. A Brief History of Microbiology Learning Objectives 1-8Explain how Pasteur's work influenced Lister and Koch. 1-9Identify the importance of Koch's postulates. 1-10Identify the importance of Jenner's work. 1-11Identify the contributions to microbiology made by Ehrlich and Fleming.

50. © 2016 Pearson Education, Inc. The Golden Age of Microbiology 1857–1914 Beginning with Pasteur's work, discoveries included the relationship between microbes and disease, immunity, and antimicrobial drugs

51. © 2016 Pearson Education, Inc. The Golden Age of Microbiology Pasteur showed that microbes are responsible for fermentation Fermentation is the microbial conversion of sugar to alcohol in the absence of air Microbial growth is also responsible for spoilage of food and beverages Bacteria that use air spoil wine by turning it to vinegar (acetic acid)

52. © 2016 Pearson Education, Inc. The Golden Age of Microbiology Pasteur demonstrated that these spoilage bacteria could be killed by heat that was not hot enough to evaporate the alcohol in wine Pasteurization is the application of a high heat for a short time to kill harmful bacteria in beverages

53. © 2016 Pearson Education, Inc. Figure 1.4 Milestones in the Golden Age of Microbiology (1 of 3).

54. © 2016 Pearson Education, Inc. The Germ Theory of Disease 1835: Agostino Bassi showed that a silkworm disease was caused by a fungus 1865: Pasteur showed that another silkworm disease was caused by a protozoan 1840s: Ignaz Semmelweis advocated handwashing to prevent transmission of puerperal fever from one obstetrical patient to another

55. © 2016 Pearson Education, Inc. The Germ Theory of Disease 1860s: Applying Pasteur's work showing that microbes are in the air, can spoil food, and cause animal diseases, Joseph Lister used a chemical antiseptic (phenol) to prevent surgical wound infections

56. © 2016 Pearson Education, Inc. Figure 1.4 Milestones in the Golden Age of Microbiology (2 of 3).

57. © 2016 Pearson Education, Inc. The Germ Theory of Disease 1876: Robert Koch discovered that a bacterium causes anthrax and provided the experimental steps, Koch's postulates, to demonstrate that a specific microbe causes a specific disease

58. © 2016 Pearson Education, Inc. Figure 1.4 Milestones in the Golden Age of Microbiology (3 of 3).

59. © 2016 Pearson Education, Inc. Vaccination 1796: Edward Jenner inoculated a person with cowpox virus, who was then immune from smallpox Vaccination is derived from the Latin word vacca, meaning cow The protection is called immunity

60. © 2016 Pearson Education, Inc. Check Your Understanding Summarize in your own words the germ theory of disease. 1-8 What is the importance of Koch's postulates? 1-9 What is the significance of Jenner's discovery? 1-10

61. © 2016 Pearson Education, Inc. The Birth of Modern Chemotherapy: Dreams of a "Magic Bullet" Treatment of disease with chemicals is called chemotherapy Chemotherapeutic agents used to treat infectious disease can be synthetic drugs or antibiotics Antibiotics are chemicals produced by bacteria and fungi that inhibit or kill other microbes

62. © 2016 Pearson Education, Inc. The First Synthetic Drugs Quinine from tree bark was long used to treat malaria Paul Ehrlich speculated about a "magic bullet" that could destroy a pathogen without harming the host 1910: Ehrlich developed a synthetic arsenic drug, salvarsan, to treat syphilis 1930s: Sulfonamides were synthesized

63. © 2016 Pearson Education, Inc. A Fortunate Accident—Antibiotics 1928: Alexander Fleming discovered the first antibiotic (by accident) Fleming observed that Penicillium fungus made an antibiotic, penicillin, that killed S. aureus 1940s: Penicillin was tested clinically and mass- produced

64. © 2016 Pearson Education, Inc. Normal bacterial colony Area of inhibited bacterial growth Penicillium colony Figure 1.5 The discovery of penicillin.

65. © 2016 Pearson Education, Inc. Check Your Understanding What was Ehrlich's "magic bullet"? 1-11

66. © 2016 Pearson Education, Inc. Modern Developments in Microbiology Learning Objectives 1-12Define bacteriology, mycology, parasitology, immunology, and virology. 1-13Explain the importance of microbial genetics and molecular biology.

67. © 2016 Pearson Education, Inc. Bacteriology, Mycology, and Parasitology Bacteriology is the study of bacteria Mycology is the study of fungi Parasitology is the study of protozoa and parasitic worms

68. © 2016 Pearson Education, Inc. Figure 1.6 Parasitology: the study of protozoa and parasitic worms.

69. © 2016 Pearson Education, Inc. Immunology Immunology is the study of immunity Vaccines and interferons are used to prevent and cure viral diseases A major advance in immunology occurred in 1933 when Rebecca Lancefield classified streptococci based on their cell wall components

70. © 2016 Pearson Education, Inc. Figure 1.7 Rebecca Lancefield (1895–1981), who discovered differences in the chemical composition of a polysaccharide in the cell walls of many pathogenic streptococci.

71. © 2016 Pearson Education, Inc. Virology Virology is the study of viruses Dmitri Iwanowski in 1892 and Wendell Stanley in 1935 discovered the cause of mosaic disease of tobacco as a virus Electron microscopes have made it possible to study the structure of viruses in detail

72. © 2016 Pearson Education, Inc. Recombinant DNA Technology Microbial genetics: the study of how microbes inherit traits Molecular biology: the study of how DNA directs protein synthesis Genomics: the study of an organism's genes; has provided new tools for classifying microorganisms Recombinant DNA: DNA made from two different sources In the 1960s, Paul Berg inserted animal DNA into bacterial DNA, and the bacteria produced an animal protein

73. © 2016 Pearson Education, Inc. Recombinant DNA Technology 1941: George Beadle and Edward Tatum showed that genes encode a cell's enzymes 1944: Oswald Avery, Colin MacLeod, and Maclyn McCarty showed that DNA is the hereditary material 1953: James Watson and Francis Crick proposed a model of DNA structure 1961: François Jacob and Jacques Monod discovered the role of mRNA in protein synthesis

74. © 2016 Pearson Education, Inc. Figure 1.4 Milestones in the Golden Age of Microbiology.

75. © 2016 Pearson Education, Inc. Check Your Understanding Define bacteriology, mycology, parasitology, immunology, and virology. 1-12 Differentiate microbial genetics from molecular biology. 1-13

76. © 2016 Pearson Education, Inc. Microbes and Human Welfare Learning Objectives 1-14List at least four beneficial activities of microorganisms. 1-15Name two examples of biotechnology that use recombinant DNA technology and two examples that do not.

77. © 2016 Pearson Education, Inc. Recycling Vital Elements Microbial ecology is the study of the relationship between microorganisms and their environment Bacteria convert carbon, oxygen, nitrogen, sulfur, and phosphorus into forms used by plants and animals

78. © 2016 Pearson Education, Inc. Bioremediation: Using Microbes to Clean Up Pollutants Bacteria degrade organic matter in sewage Bacteria degrade or detoxify pollutants such as oil and mercury

79. © 2016 Pearson Education, Inc. Figure 27.8 Composting municipal wastes.

80. © 2016 Pearson Education, Inc. Insect Pest Control by Microorganisms Microbes that are pathogenic to insects are alternatives to chemical pesticides Prevent insect damage to agricultural crops and disease transmission Bacillus thuringiensis infections are fatal in many insects but harmless to animals and plants

81. © 2016 Pearson Education, Inc. Figure 11.21 Bacillus. Bacillus thuringiensis. The diamond-shaped crystals shown next to the endospore are toxic to insects that ingest them. This electron micrograph was made using the technique of shadow casting. Endospore Collapsed B. thuringiensis Toxic crystal

82. © 2016 Pearson Education, Inc. Modern Biotechnology and Recombinant DNA Technology Biotechnology is the use of microbes for practical applications, such as producing foods and chemicals Recombinant DNA technology enables bacteria and fungi to produce a variety of proteins, vaccines, and enzymes Missing or defective genes in human cells can be replaced in gene therapy Genetically modified bacteria are used to protect crops from insects and from freezing

83. © 2016 Pearson Education, Inc. Check Your Understanding Name two beneficial uses of bacteria. 1-14 Differentiate biotechnology from recombinant DNA technology. 1-15

84. © 2016 Pearson Education, Inc. Microbes and Human Disease Learning Objectives 1-16Define normal microbiota and resistance. 1-17Define biofilm. 1-18Define emerging infectious disease.

85. © 2016 Pearson Education, Inc. Normal Microbiota Bacteria were once classified as plants, giving rise to the term flora for microbes This term has been replaced by microbiota Microbes normally present in and on the human body are called normal microbiota

86. © 2016 Pearson Education, Inc. Figure 1.8 Several types of bacteria found as part of the normal microbiota on the surface of the human tongue.

87. © 2016 Pearson Education, Inc. Normal Microbiota Normal microbiota prevent growth of pathogens Normal microbiota produce growth factors such as vitamins B and K Resistance is the ability of the body to ward off disease Resistance factors include skin, stomach acid, and antimicrobial chemicals

88. © 2016 Pearson Education, Inc. Biofilms Microbes attach to solid surfaces and grow into masses They will grow on rocks, pipes, teeth, and medical implants Biofilms can cause infections and are often resistant to antibiotics

89. © 2016 Pearson Education, Inc. Figure 1.9 Biofilm on a catheter. Staphylococcus

90. © 2016 Pearson Education, Inc. Emerging Infectious Diseases When a pathogen invades a host and overcomes the host's resistance, disease results Emerging infectious diseases (EIDs): new diseases and diseases increasing in incidence

91. © 2016 Pearson Education, Inc. Emerging Infectious Diseases Middle East respiratory syndrome (MERS) Caused by Middle East respiratory syndrome coronavirus (MERS-CoV) Common to SARS Severe acute respiratory syndrome 100 deaths in the Middle East from 2012 to 2014

92. © 2016 Pearson Education, Inc. Emerging Infectious Diseases Avian influenza A (H5N1) Influenza A virus Primarily in waterfowl and poultry Sustained human-to-human transmission has not yet occurred

93. © 2016 Pearson Education, Inc. Figure 13.3b Morphology of an enveloped helical virus. Spikes

94. © 2016 Pearson Education, Inc. Emerging Infectious Diseases Methicillin-resistant Staphylococcus aureus (MRSA) 1950s: Penicillin resistance developed 1980s: Methicillin resistance 1990s: MRSA resistance to vancomycin reported VISA: vancomycin-intermediate S. aureus VRSA: vancomycin-resistant S. aureus

95. © 2016 Pearson Education, Inc. Emerging Infectious Diseases West Nile encephalitis (WNE) Caused by West Nile virus First diagnosed in the West Nile region of Uganda in 1937 Appeared in New York City in 1999 In nonmigratory birds in 48 states Transmitted between birds and to horses and humans by mosquitoes

96. © 2016 Pearson Education, Inc. Diseases in Focus 22.2 (1 of 3)

97. © 2016 Pearson Education, Inc. Emerging Infectious Diseases Bovine spongiform encephalopathy Caused by a prion An infectious protein that also causes Creutzfeldt-Jakob disease (CJD) New variant of CJD in humans is related to cattle that have been given feed made from prion-infected sheep

98. © 2016 Pearson Education, Inc. Figure 22.18b Spongiform encephalopathies. Holes

99. © 2016 Pearson Education, Inc. Emerging Infectious Diseases E. coli O157:H7 Toxin-producing strain of E. coli First seen in 1982; causes bloody diarrhea Leading cause of diarrhea worldwide

100. © 2016 Pearson Education, Inc. Figure 25.11 Pedestal formation by Enterohemorrhagic E. coli (EHEC) O157:H7.

101. © 2016 Pearson Education, Inc. Emerging Infectious Diseases Ebola hemorrhagic fever (EHF) Ebola virus Causes fever, hemorrhaging, and blood clotting Transmitted via contact with infected blood or body fluids First identified near Ebola River, Congo 2014 outbreak in Guinea; hundreds killed

102. © 2016 Pearson Education, Inc. Figure 23.21 Ebola hemorrhagic virus.

103. © 2016 Pearson Education, Inc. Emerging Infectious Diseases Cryptosporidiosis Cryptosporidium protozoa First reported in 1976 Causes 30% of diarrheal illness in developing countries In the United States, transmitted via water

104. © 2016 Pearson Education, Inc. Figure 25.17 Cryptosporidiosis. Oocyst Intestinal mucosa

105. © 2016 Pearson Education, Inc. Emerging Infectious Diseases AIDS (acquired immunodeficiency syndrome) Caused by human immunodeficiency virus (HIV) First identified in 1981 Sexually transmitted infection affecting males and females Worldwide epidemic infecting 35 million people; 6000 new infections every day HIV/AIDS in the United States: 26% are female, and 49% are African American

106. © 2016 Pearson Education, Inc. Check Your Understanding Differentiate normal microbiota and infectious disease. 1-16 Why are biofilms important? 1-17 What factors contribute to the emergence of an infectious disease? 1-18