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Citizen Science Infrastructure at the DNA Learning Center Christine Marizzi, PhD DNA Barcoding Programs Manager Cold Spring Harbor Laboratory ECSITE pre-conference.

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Presentation on theme: "Citizen Science Infrastructure at the DNA Learning Center Christine Marizzi, PhD DNA Barcoding Programs Manager Cold Spring Harbor Laboratory ECSITE pre-conference."— Presentation transcript:

1 Citizen Science Infrastructure at the DNA Learning Center Christine Marizzi, PhD DNA Barcoding Programs Manager Cold Spring Harbor Laboratory ECSITE pre-conference workshop, 2016 cmarizzi@cshl.educmarizzi@cshl.edu @cmarizzi

2 Just as the unique pattern of bars in a universal product code (UPC) identifies each consumer product, a short “DNA barcode” (about 600 nucleotides in length) is a unique pattern of DNA sequence that can potentially identify each species. DNA Barcoding Programs

3 Collect samples Sequence Import sequences Assemble sequences Analyze sequences Export sequences Add additional sequences Wet-lab DNA extraction and PCR www.urbanbarcodeproject.org www.dnabarcoding101.org

4 Collect samples DNA extraction and PCR Sequence Import sequences Assemble sequences Analyze sequences Export sequences Add additional sequences Bioinformatics Ride!

5 DNA Barcoding Programs: Our collaborators

6 2012-16 DNA Barcoding Programs 873 Students First research experience for most >30% underrepresented minorities in science 345 Teams 212 Mentors from 159 Institutions 5 NYC Boroughs 5,800 samples processed 9,900 barcode sequence reads, > 2,6 Million Next Generation Sequencing reads 125 novel barcode sequences published at GenBank several publications in high-impact journals with student's contribution

7 Evaluation (Attitude changed) SURE-III: High school DNA barcoding research has similar impacts as undergraduate research Evaluation (Attitude changed) SURE-III: High school DNA barcoding research has similar impacts as undergraduate research

8 DNALC Exit Survey 2012-2015 (conceptional)

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