1. 1 Publications = Data, Data ≠ Publications A Semantic Publishing Vision Prof. Dr. Stefan Gradmann Humboldt-Universität zu Berlin / School of Library and Information Science stefan.gradmann@ibi.hu-berlin.de

2. 2 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference A Three-Course Menu Hors d'oeuvre: The distinction of 'publications' and 'data' never worked universally! Main course: Gutenberg Galaxy → Turing Galaxy → Semantic Publishing Dessert: Surprise

3. 3 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Hors d'Oeuvre Data = Publication ≠ Data?

4. 4 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Where the distinction never really worked... Publication formats and research data have always been intrinsically disjoint in the STM area: this fact is at the origin of of the conference theme … … there was until recently no inherent connection between the publishing container and the published content (hence the success of tools like http://pdos.csail.mit.edu/scigen/!)http://pdos.csail.mit.edu/scigen/ 'Data' and 'publication' belong to different signification models! Publishing formats of scholarly discourse and the objects of this discourse are intrinsically interwoven in large parts of the humanities … … producing books about books! Discourse and meta-discourse (data and publications) traditionally are part of one shared model of signification!

5. 5 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Main Course Towards Semantic Publishing

6. 6 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Linear Document Continuum... … in the Gutenberg galaxy

7. 7 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Linear Document Continuum... … in emulation mode

8. 8 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Linear Document Continuum... … going digital (entering Turing galaxy)

9. 9 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Decreasing functional determination by traditional cultural techniques Disintegration of the linear / circular functional paradigma Erosion of the monolithic document notion in hypertext paradigms Web Based Scholarly Working Continuum... … a triple paradigm shift: Beyond Documents

10. 10 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Ted Nelson's Xanadu: radicalised Hypertext...

11. 11 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference … the web of 'documents' extended with a web of 'things'...

12. 12 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference … another instance of the web of 'things'...

13. 13 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference … and 'publication' aggregations combining 'documents' and 'things' Where do resource aggregations 'start'? Where do they 'end'? And what constitutes document boundaries?? And which node was connected to which one at a given time??? A B C

14. 14 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Machines can reason on triple sets!

15. 15 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Some reasoning preconditions...

16. 16 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference … and an automated inference! There is quite some potential for generating scholarly heuristics here!

17. 17 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Citation: van Haagen HHHBM, 't Hoen PAC, Botelho Bovo A, de Morrée A, van Mulligen EM, et al. (2009) Novel Protein-Protein Interactions Inferred from Literature Context. PLoS ONE 4(11): e7894. doi:10.1371/journal.pone.0007894 / Example provided by Jan Velterop The use of Inferences Citation: van Haagen HHHBM, 't Hoen PAC, Botelho Bovo A, de Morrée A, van Mulligen EM, et al. (2009) Novel Protein-Protein Interactions Inferred from Literature Context. PLoS ONE 4(11): e7894. doi:10.1371/journal.pone.0007894 / Example provided by Jan Velterop

18. 18 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference LoD: Billions of Triples … … and Semantic Publishing! http://esw.w3.org/TaskForces/CommunityProjects/LinkingOpenData/DataSets 3434

19. 19 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Semantic Publishing as Defined by Shotton Shotton et al. (2009b) define semantic publication to include anything that enhances the meaning of a published journal article, facilitates its automated discovery, enables its linking to semantically related articles, provides access to data within the article in actionable form, or facilitates integration of data between articles. Example of an enhanced article

20. 20 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference An example

21. 21 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Semantic Enrichment Tools Generic: OpenCalais (http://www.opencalais.com/)http://www.opencalais.com/ Temis (http://www.temis.com/)http://www.temis.com/ Specialised: Bio Taxon Finder (http://www.ubio.org/index.php?pagename=x ​ ml_services)http://www.ubio.org/index.php?pagename=x ConceptWebAlliance (http://conceptwiki.org) (Biomedical, Jan Velterop)http://conceptwiki.org Good critique by Roderic Page: http://iphylo.blogspot.com/2009/04/semantic-publishing-towards-real.html http://iphylo.blogspot.com/2009/04/semantic-publishing-towards-real.html “linking terms to HTML pages doesn't get us much further. Great for humans, not so good for computers.” Too much focus on journal article format! → We need a little more!

22. 22 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Semantic Micro-Content: PAUX PAUX (http://www.paux.de): origins in eLearninghttp://www.paux.de PAUX is a Semantic Wiki, which is not based on static HTML pages, but instead consists of dynamic documents, which are provided at runtime from semantic microcontent (“PAUX- Objects”), which are semantically linked by “PAUX-Links” Microcontent elements have HTTP URIs! → PAUX documents can be published as Linked (Open) Data aggregations with maximum granularity: on word level.

23. 23 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Granular Semantic Publishing: Paux (1)

24. 24 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Very Granular Semantic Publishing: Paux (2)

25. 25 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Semantic Publishing: Paux (3)

26. 26 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Linked Semantic Publishing: Paux (4)

27. 27 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Linked Semantic Publishing: Paux (5)

28. 28 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Social Semantic Publishing: Paux (6)

29. 29 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Paux live (1): Outline & Sentences c

30. 30 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Paux live (2): Sentence & Linking Options

31. 31 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Paux live (3): Word & Hyperlinks

32. 32 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Paux live (4): Word & Link to Sentence

33. 33 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Data = Publication Distinction data vs. publication will get increasingly obsolete in semantic publishing environments … … at least (and somewhat paradoxically) in the STM sector. The move into semantic publication will be much slower in the SSH because of fuzzy and unstable terminology fuzzy linking semantics hard to formalise consistently close relation between complex document formats and scholarly discourse Current examples are mostly from the medical and bio-medical area as a consequence. => Jan Velterop's concept of “Nano-Publications” or Bill Town's examples from chemistry (namely OreChem)

34. 34 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Dessert Surprise

35. 35 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Semantics and Reputation: Valued Resources How to create value in the sense of building reputation? The currency in semantic publishing will not just be 'data volume' or 'amount of information' but 'attention'! Creating attention is the hidden driving force behind the 2.0 hype, as well. A resource that doesn't deserve attention will be of little value in such an environment. Semantic contextualisation is key for creating attention in future scholarly environments (think back to LoD cloud!)back to LoD cloud The elementary digital curation decision thus remains a very old one: what to semantically enrich (and thus add value to) - and what to forget? Do not keep data, nor information: preserve knowledge! Context is king!

36. 36 Data Publications / Prof. Dr. Stefan Gradmann London: Fourth Bloomsbury Conference Some Reading David Shotton (2009a): Semantic Publishing. The coming revolution inscientific journal publishing. Learned Publishing Volume 22, No 2, 85–94, April 2009; doi:10.1087/2009202 David Shotton et al. (2009b): Adventures in Semantic Publishing: Exemplar Semantic Enhancements of a Research Article (http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000361)http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000361 Barend Mons, Jan Velterop: Nano-Publication in the e-science era ( http://www.surffoundation.nl/SiteCollectionDocuments/Nano- Publication%20-%20Mons%20-%20Velterop.pdf) http://www.surffoundation.nl/SiteCollectionDocuments/Nano- Publication%20-%20Mons%20-%20Velterop.pdf