1. Using the bioBakery Curtis Huttenhower (chuttenh@hsph.harvard.edu)
Galeb Abu-Ali
Ali Rahnavard
STAMPS 2017
Harvard T.H. Chan School of Public Health
Department of Biostatistics

3. The bioBakery: a next-generation environment for microbiome analyses
Environment for meta’ome analysis
Shotgun metagenomes/transcriptomes
Taxonomic and functional profiling
Experimental design, statistical analysis
Pre-built one-click environments to run:
On your laptop graphically
On a server remotely
On the cloud (Amazon / Google)

4. Launching the bioBakery on Google Cloud
Lauren
McIver
Workshop Usage
Web Browser

5. Launching the bioBakery on Google Cloud
Lauren
McIver
Connect to the VPN first!
In the instance list, find your number.
Connect to that instance.
Make sure you can launch a terminal and run a command.
(I recommend echo hello world)
Make sure you can upload and download a file.
student
biobakery