1. Library # ESTs and Descriptions
Bacterial infected leaf
Flower bud
Anther
Fruit, early fruit
Hair root
Early root
Placenta
Pytophthora capsici infected plant
Fruit,immature: cm(+seeds)
Fruit, mature green: pericarp(-seeds)
Fruit, breaker: pericarp(-seeds)
Fruit, mature red ripe: pericarp(-seeds)
Seeds of friuts with placenta
Flower bud, size 3~ 8mm
Open flower
Bark
Peduncle
Callus/ regeneration
Germination stage: 4 & 6 day
Germination stage: 18 day
rbcS-silenced leaves
9749 Capsicum annuum
Capsicum chinense
Capsicum frutescens
Capsicum baccatum
Capsicum chacoense
Capsicum pubescens
Capsicum eximium
Capsicum ciliatum
Capsicum cardenasii
Capsicum galapagoense
Capsicum lycianthoides
Capsicum tovarii
Capsicum flexuosum
Capsicum spp.

2. Pepper Chip: Custom Content
Capsicum
ESTs
123,489
Capsicum
genomic DNA
466
Capsicum
mRNAs
515
COS markers
642
30,815 unigenes

3. Chip Design Array Format: 49 Feature Size: 5 µm
Custom content:    6,415,642 probes/30,815 unigenes
Background probes:    33,886 antigenomic (surrogate MM) probes
Bacterial Expression sets: 81 probe sets including bioB, bioC, bioD from E. coli and cre from P1 Bacteriophage and Dap, lys, phe, thr, trp from B. subtilis
Technical Replicate Controls: 100 probes organized into 10 sets of 10 probes each tiled 169 times
SNP training set

4. Distribution of probes per sequence
Mean =210 probes/unigene

5. Pepper Microarray Consortium
PIs: Allen Van Deynze, Alex Kozik, Jiquiang Yao and Jim Prince
Collaborators: Molly Jahn, Shanna Moore, Doil Choi
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