1. Using the Field Book App and BIMS in GDR for Peach Breeding
Ksenija Gasic, Trevor Rife, Jesse Poland, Sook Jung, Jim McFerson, Michael Coe, Kate Evans, Nnadozie Oraguzie, Lisa Wasko DeVetter, Cameron Peace, Mercy Olmstead, Michael Kahn, Dorrie Main

2. Outline Using the FieldBook App in peach breeding
Demo of GDR BIMS (Breeding Information Management System)

3. Collecting Field notes
Get the App by
searching for Field Book
github.com/trife
wheatgenetics.org/apps

4. FieldBook App

5. FieldBook App - traits Numeric Date Percent Categorical Text Photo
Multicat
Rust Rating
Counter

6. FieldBook App – import file
Field_ID
Row
Tree
Name
R_T
NVB_1_1-3_KV 1
1_3 KV
R1T1_3
NVB_1_7-9_KV
7_9 KV
R1T7_9
NVB_1_10-12_KV
10_12 KV
R1T10_12
NVB_1_13-15_KV
13_15 KV
R1T13_15
NVB_1_16-18_KV
16_18 KV
R1T16_18
NVB_1_19-21_KV
19_21 KV
R1T19_21
NVB_1_22-24_Sweet Dream
22_24
Sweet Dream
R1T22_24
NVB_1_25-26_Galaxy
25_26
Galaxy
R1T25_26
NVB_1_27-29_China Pearl
27_29
China Pearl
R1T27_29
NVB_1_36-38_Intrepid
36_38
Intrepid
R1T36_38
NVB_1_39-40_Carolina Gold
39_40
Carolina Gold
R1T39_40
NVB_1_42-44_Summer Gold
42_44
Summer Gold
R1T42_44
NVB_1_45-47_Belle of Georgia
45_47
Belle of Georgia
R1T45_47
NVB_1_49-50_Flameprince
49_50
Flameprince
R1T49_50
NVB_2_25-27_Late Large 23 2
25_27
Late Large 23
R2T25_27
NVB_2_22,24_5D Big
22,24
5D Big
R2T22,24
NVB_2_19-21_9 Ball
9 Ball
R2T19_21

7. FieldBook App – exporting data
Export to CSV files
Two formats: database, table
Choose what gets exported
All field columns vs. Unique ID
All traits vs. Active traits
Overwrite previous export
Option to share to other services after export

8. FieldBook App – export formats
Database
Field_ID
Row
Tree
Name
R_T
trait
value
person
timestamp
NVB_1_25-26_Galaxy 1
25_26
Galaxy
R1T25_26
50% Bloom
trey_
:00:37
90% Bloom
:00:45
NVB_4_49-50_BY01z1957t 4
49_50
BY01z1957t
R4T49_50
:02:06
NVB_4_43-45_BY00m2264z
43_45
BY00m2264z
R4T43_45
:02:15
:02:18
Table
Field_ID
Row
Tree
Name
R_T
50% Bloom
90% Bloom
NVB_1_1-3_KV 1
1_3 KV
R1T1_3
NVB_1_7-9_KV
7_9 KV
R1T7_9
NVB_1_10-12_KV
10_12 KV
R1T10_12
NVB_1_13-15_KV
13_15 KV
R1T13_15
NVB_1_16-18_KV
16_18 KV
R1T16_18

9. Using the FieldBook App in peach breeding
FieldBook app downloaded on two tablets and one phone
All material relevant for the peach breeding program and planted at the research farm, prepared as “import files”, uploaded into the app
Traits prepared and uploaded to all devices
Collected data stays within the app
No syncing between devices available – will be part of BIMS
Weekly export of collected data and update of the import files with column “evaluated” (yes/no) allows the tracking of what has been evaluated

10. Using the FieldBook App in peach breeding
Data are connected with the Unique_ID not the import file name
Data can be changed in the app and lost if not downloaded frequently
Data stay in the app until the database has been reset
Reset removes the data from the app and disconnects the collected audio and photo data from unique_ID
Prior to resetting download the database
FieldBook is used for collection of data in field and in lab

11. Vision of BIMS
To aid new cultivar development by providing individual breeders with a secure and comprehensive online breeding information management system which will allow them to:
Store, manage, archive and analyze their private breeding program data
Fully integrate their data with publicly available genomic, genetic and breeding data
Manage data from the Field Book App, an android app for efficient collection of phenotype data in the field and laboratory

12. Components of BIMS in GDR
Archive
Manage Breeding
Data Import, Edit and Download
Search and Compare
Field Book App Management
Data Analysis Tools
Breeding Decision Tools

13. BIMS Home
Login from GDR home page accesses the breeders private BIMS

14. Archive
Archive complete breeding program data to PC and view history of archiving
The Archive function in BIMS allows you at any time to save your data to your local device (computer, tablet, phone etc.) You will be able to select all the data, some of the data, between dates and in requested format.

15. Manage Breeding – Manage Program
In the manage program section, you can edit information on your program and also add members and give them privileges to read or read and write.
Add members and give them privileges to read or read/write

16. Manage Breeding – Manage Lists
Create lists of germplasm and traits to make phenotypic data collection sheets, download phenotypic or genotypic data in ‘Download’ or any other future BIMS tools.
You can create lists of germplasm and traits to make phenotypic data collection sheets, download phenotypic or genotypic data in ‘Download’ or any other future BIMS tools.

17. Manage Breeding – Manage Traits
View existing traits and trait details
Add/edit/delete traits in admin menu
In the manage trait section, you can view existing traits and trait details. In the Admin menu, you can add, edit or delete traits. You can do the same thing in sections such as location, cross and germplasm.

18. Manage Breeding – Manage Trials
View all trials. Clicking on a trial name, populates the trial description

19. Manage Breeding – Manage Trials
Add new trials, edit or remove trials from the program.

20. Manage Breeding – Manage Trials
View all trials. Right click and create new folders and move trials into the new folder.

21. Manage Breeding – Manage Trials
Clicking on trial provides data selectable by trait, stats about the trait and access to view/ download all the data for the trial.

22. Manage Breeding – Manage Trials
The phenotypic data can be sorted by column heading. We will add ability to select what data is displayed in the table

23. Manage Breeding – Manage Trials
The Breeding Line Tree shows all the progeny and breeding lines that have been tested. Clicking on a breeding line shows all the trials where the breeding line was phenotyped, Clicking any trial name will access the same phenotype page with the statistical information and the entire phenotype data.

24. Data Import - Templates
In data import, templates for each type of data are available for download in template list page. Data import for Field Book App output will be shortly available.

25. Data Import - Templates
In data import, templates for each type of data are available for download in template list page. Data import for Field Book App output will be shortly available.

26. Data Import – Upload data from Templates
In data upload, files can be uploaded. The status of the upload is shown. The history of files uploaded is being added with submission details.

27. Search – By Germplasm Name
Search by name, search germplasm records by name or upload a file of germplasm to return summary details, then drill down to crosses, trials and phenotype data for that germplasm.

28. Download – By Trial
Download all the phenotype data by trial. Download by list available later.

29. FieldBook App Management
Upload trait evaluation data collected with the Field Book App to BIMS
Download trait data collection files in Field Book Format

30. Timeline for Development
V1.0 by January 2017
Load complete breeding program data and tested by breeder
Feedback from breeders on proposed BIMS
V1.0 by June 2017
Excel template and FieldBook App data loading available
Search germplasm by name, parentage, trait, and genotype available
Archiving available
V2.0 by September 2017
Compare by germplasm and dataset available