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Fig. 1. Top-level classes of SBRML-OM.

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Presentation on theme: "Fig. 1. Top-level classes of SBRML-OM."— Presentation transcript:

1 Fig. 1. Top-level classes of SBRML-OM.
From: SBRML: a markup language for associating systems biology data with models Bioinformatics. 2010;26(7): doi: /bioinformatics/btq069 Bioinformatics | © The Author Published by Oxford University Press. All rights reserved. For Permissions, please

2 Fig. 2. The skeleton of systems biology results description in SBRML showing only the top-level elements and their subelements. From: SBRML: a markup language for associating systems biology data with models Bioinformatics. 2010;26(7): doi: /bioinformatics/btq069 Bioinformatics | © The Author Published by Oxford University Press. All rights reserved. For Permissions, please

3 Fig. 3. SBRML fragment for encoding ontology terms.
From: SBRML: a markup language for associating systems biology data with models Bioinformatics. 2010;26(7): doi: /bioinformatics/btq069 Bioinformatics | © The Author Published by Oxford University Press. All rights reserved. For Permissions, please

4 Fig. 4. SBRML-OM—operation class and its associations.
From: SBRML: a markup language for associating systems biology data with models Bioinformatics. 2010;26(7): doi: /bioinformatics/btq069 Bioinformatics | © The Author Published by Oxford University Press. All rights reserved. For Permissions, please

5 Fig. 5. SBRML fragment for encoding operation performed on biochemical model.
From: SBRML: a markup language for associating systems biology data with models Bioinformatics. 2010;26(7): doi: /bioinformatics/btq069 Bioinformatics | © The Author Published by Oxford University Press. All rights reserved. For Permissions, please

6 Fig. 6. SBRML-OM—result classes and their associations.
From: SBRML: a markup language for associating systems biology data with models Bioinformatics. 2010;26(7): doi: /bioinformatics/btq069 Bioinformatics | © The Author Published by Oxford University Press. All rights reserved. For Permissions, please

7 Fig. 7. Example SBRML file describing results of a steady state solution of model 68 of the BioModels database. From: SBRML: a markup language for associating systems biology data with models Bioinformatics. 2010;26(7): doi: /bioinformatics/btq069 Bioinformatics | © The Author Published by Oxford University Press. All rights reserved. For Permissions, please

8 Fig. 8. SBRML fragment for time course simulation results of model number 68 of the BioModels database. From: SBRML: a markup language for associating systems biology data with models Bioinformatics. 2010;26(7): doi: /bioinformatics/btq069 Bioinformatics | © The Author Published by Oxford University Press. All rights reserved. For Permissions, please

9 Fig. 9. SBRML fragment showing how to encode enzyme kinetic data.
From: SBRML: a markup language for associating systems biology data with models Bioinformatics. 2010;26(7): doi: /bioinformatics/btq069 Bioinformatics | © The Author Published by Oxford University Press. All rights reserved. For Permissions, please

10 Fig. 10. SBRML fragment showing how to encode microarray data.
From: SBRML: a markup language for associating systems biology data with models Bioinformatics. 2010;26(7): doi: /bioinformatics/btq069 Bioinformatics | © The Author Published by Oxford University Press. All rights reserved. For Permissions, please

11 Fig. 11. SBRML fragment showing how to encode results of complex parameter scan operation on model number 68 of the BioModel database. From: SBRML: a markup language for associating systems biology data with models Bioinformatics. 2010;26(7): doi: /bioinformatics/btq069 Bioinformatics | © The Author Published by Oxford University Press. All rights reserved. For Permissions, please

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