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Implementing a Digital Pathology System for Primary Diagnosis: The nuts & bolts Liron Pantanowitz MD Professor of Pathology & Biomedical Informatics Director of Pathology Informatics UPMC, Pittsburgh, USA
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Notice of Faculty Disclosure
In accordance with ACCME guidelines, any individual in a position to influence and/or control the content of this ASCP CME activity has disclosed all relevant financial relationships within the past 12 months with commercial interests that provide products and/or services related to the content of this CME activity. The individual below has disclosed the following financial relationship(s) with commercial interest(s): Liron Pantanowitz, MD Omnyx Consultant fee Consultant
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Objectives Review lessons learned from labs that have already committed to going fully digital Highlight parameters to consider when implementing a full digital pathology system Offer recommendations for labs contemplating such a digital transition
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Introduction Going entirely digital is defined as:
Digitizing all glass slides With whole slide imaging Prospective scanning For primary diagnosis Very few labs in the USA have gone entirely digital for primary diagnosis Only rare pathology labs in Europe have started their digital conversion
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University Medical Center Utrecht
J Pathol Inform 2013; 4:15 University Medical Center Utrecht Digital slides routinely scanned at ×20 magnification Results on average with file sizes of 350 MB Tiered storage system (top tier is a fast disk based solution and lower tier a tape archive)
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Kalmar County Hospital & neighboring Linköping University Hospital
J Pathol Inform 2014; 5:14 Kalmar County Hospital & neighboring Linköping University Hospital 150 cases/week outsourced to a private clinic for primary review Slides scanned mostly at ×20 (0.49 microns/pixel) For data storage average size of 0.4 GB per slide Keep 6 months of digital slides, and older slides are automatically deleted
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European Experience: Some Lessons
Full implementation occurred after positive internal validation Glass slides scanned were also physically delivered to pathologists Conventional & digital workflow is maintained simultaneously Measures to reduce scan failure rate (e.g. smaller tissue on slides, baking slides prior to scans, cleaning slides) Barcoding to automatically connect scanned slides to cases in LIS Bulk scanning occurred overnight; daytime flexibility (e.g. rush cases) Measures to avoid scanner downtime (e.g. use UPS, use LED light sources to limit calibrations, reboot PC daily to avoid memory issues)
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Pittsburgh Experience
UPMC started their (preparation for) conversion to digital pathology many years ago Implementation of a digital pathology platform for primary diagnosis began around 1 year ago
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Value Proposition
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Return on Investment
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Planning Stage Engagement of key stakeholders Budget considerations
Pathologists (identify champions, involve senior leaders) Non-pathologists (IT division, lab managers, admin folks) Budget considerations Technology (scanners, workstations, storage, facilities) Staff (imaging technicians, IT analysts, admin support) Flexibility Successive consolidation of services Factor in changes in technology Regulatory environment (FDA)
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Operations Facility renovations Workflow impact Validation & Training
Accommodate scanning (core lab, space, device weight/size, lean location near slide production, noise, maintenance, slide storage) Sign out areas (offices, sign out area/rooms, retaining microscopes, lighting, mounted monitors, desk modifications) Workflow impact Pre-imaging factors (barcoding, tissue placement, slide preparation, avoiding pen marks and sticky labels) Hybrid workflows (digital & glass slides, case selection for scanning) Downtime plan (scan failure, monitor interfaces, notifications) Validation & Training Follow CAP guidelines Training pathologists Data capture (feedback, studies)
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Core Histology Lab
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Digital Workflow Note: Adding a WSI scanner to workflow causes several changes upstream & downstream
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Office Workstation
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Training Pathologists
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Information Technology
Vendor solution Suitable hardware (scanners, server) & Software Development (test) & Production (live) systems Separate Clinical & Education/Research environments Data storage Scan magnification (20x &/or 40x) Local &/or central data repository Retention policy & Hot/Cold storage Boosting network connectivity (1 GB) LIS integration Back-end interface (web service/HL7 interface) Automatic slide/case matching & access to metadata Front-end solutions (single sign-on to PACS, EMR, etc.) Workstation deployment Histology lab, offices & sign out rooms PC requirements (e.g. 64-bit OS) Web-enabled solution
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Example of Storage Projections
Stages Year 1 Year 2 Year 3 Year 4 Year 5 Hot (TB) 21.42 86.76 180.2 266.37 305.73 Cold (TB) 0.00 108.18 266.78 446.39 572.11 Back up (TB) 180.02 Total (TB) 42.84 281.70 626.82 979.13 Courtesy of Gonzalo Romero Lauro Total estimated storage needs = TB
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Clinical Use Cases Incremental workload increase
Stepwise subspecialty rollout plan E.g. Surgical pathology (first small biopsies, fewer parts) Autopsy service, including neuropathology (slower TAT) Exceptions (cytology, hematopathology, cases with bugs) Digital consultation (internal/external) IHC core lab (centralization of staining) Image analysis (e.g. breast markers) Others (QA, archiving, projects, etc.)
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Rate of Adoption Accelerated Rollout Incremental Adoption Advantages
Disadvantages Full Span Higher Upfront Cost Lower Upfront Cost Limited Span Focused Support Immature Adoption Mature Adoption Extended Support Faster Feedback Limited Use Cases Lower Refresh Cost Slow Feedback Less Time Impacts Operations Clinical Validation Takes Longer
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Change Management Project activities not to be overlooked:
Communication (e.g. memos, grand rounds) Ongoing training (especially for pathologists) Lots of meetings (histology lab, IT, vendor) Keep senior leadership in the loop (lab visits) Engage pathologists (validations, studies) Empower users (let them help solve problems) Monitor for any diagnostic discrepancies Expect "unexpected" consequences of change Other minor issues (critics, outside visitors)
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Change Curve Commitment Change Skeptics Denial Confusion Acceptance
Positive Commitment Change Skeptics Denial Confusion Acceptance Optimism Some ideas Impact Resistance Anger Negative Status Quo Disruption Exploration Rebuilding Stages (time)
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Take Home Points Key internal factors: leadership support, IT infrastructure Important external factors: changes in technology Consider incremental rollout over accelerated adoption Early wins provides good proof of concept & champions Faculty engagement is key (create a digital culture for buy-in) Benefits of adopting digital pathology early on include: Possible ROI (e.g. consolidation of services) Some efficiencies (e.g. timely IHC review, consultation) Digital platform to build on (e.g. image analysis, database)
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