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Math in Genetics Making Suby Proud
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Probability Ex: What is the probability parents will have a boy?
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Probability Ex: What is the probability parents will have three children & all will be boys? Rule of multiplication: 1/2 x 1/2 x 1/2 = 1/8
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Ex: rule of multiplication
Parent 1 genotype: AABbCc Parent 2 genotype: AaBbCc What is the probability the offspring will be: AaBbcc A a B b C c
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Ex: rule of multiplication
Parent 1 genotype: AABbCc Parent 2 genotype: AaBbCc What is the probability the offspring will be: AaBbcc A AA a Aa B b BB Bb bb C c CC Cc cc
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Ex: rule of multiplication
Parent 1 genotype: AABbCc Parent 2 genotype: AaBbCc What is the probability the offspring will be: AaBbcc ½ X ½ X ¼ = 1/16 A AA a Aa B b BB Bb bb C c CC Cc cc
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Probability Ex: If there are 4 aces and 4 kings in a deck of 52 cards, what is the probability of getting dealt an ace or a king? Rule of addition 4/52 + 4/52 = 8/52
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Probability of height T = Tall t= Short Parents Tt X Tt T t T t
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Expected results TT Tt tt
T = Tall ¾ = Tall t= Short ¼ = short Parents Tt X Tt T t T t TT Tt tt
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Probability of height and shape
T = tall R = round t = short r = square Parents: TtRr X TtRr TR Tr tR tr TR Tr tR tr
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Expected results TTRR TTRr TtRR TtRr TTrr Ttrr ttRR ttRr ttrr
T = tall R = round t = short r = square Parents: TtRr X TtRr TR Tr tR tr TR Tr tR tr TTRR TTRr TtRR TtRr TTrr Ttrr ttRR ttRr ttrr
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Expected Results 9/16 = Tall and round 3/16 = Tall and square
3/16 = Short and Round 1/16 = Short and square
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Mendel rarely saw perfect ratios
Mendel Results: 910 = Tall and round 310 = Tall and square 290 = Short and Round are these results reliable? 90 = Short and square Do these numbers follow mendel’s rule?
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What about these results?
850 = Tall and round 349 = Tall and square 252 = Short and Round 149 = Short and square peas are awesome
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Chi-square Test How can we decide if data fits any of the Mendelian ratios? Chi-Square or Goodness of Fit test
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chi-square Formula Χ = chi ∑ = sum Obs = the number observed results
Exp = the number of expected results
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Example An exp. produces 290 purple &110 white flowers
What might be the key for this problem? PP – purple Pp – purple pp – white What might be the parents genotypes? Pp X Pp Based upon this info what results would you expect? 300 purple & 100 white
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Example Therefore: Plug & chug: What does this number mean?
Purple: obs = 290 & exp = 300 White: obs = 110 & exp = 100 Plug & chug: 2 = ( )2 / ( )2 / 100 2 = 1.333 What does this number mean?
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qualifications Reasonable: Degrees of Freedom: Critical Value:
A result does not differ significantly from expectations if it could happen at least 1 time in 20. P = 1/20 = 0.05 Degrees of Freedom: the number of independent variables (total groups -1) df = 2 (purp. & white) – 1 = 1 Critical Value: The number given by 2
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Critical Chi-Square “reject the null hypothesis” “fail to reject”
If chi-square value is greater than the critical value Not reliable data “fail to reject” If chi-square value is less than the critical value Reliable data 1.333 < 3.841
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Another Example: from Mendel
phenotype observed expected ratio expected number round yellow 315 9/16 312.75 round green 101 3/16 104.25 wrinkled yellow 108 wrinkled green 32 1/16 34.75 total 556 1
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Chi-Square Use the formula X2 = (315 - 312.75)2 / 312.75
+ ( )2 / + ( )2 / + ( )2 / 34.75 = = 0.470
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D.F. and Critical Value df: 4 - 1 = 3 p = 0.05 critical value: 7.815
0.470 < 7.815 Fail to reject the null hypothesis
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