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Published byDerick Stokes Modified over 6 years ago
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Procedure for structure analysis Overview of strategy
What is needed lattice parameters space group equipoint occupation positional parameters reflection positions reflection intensities
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Procedure for structure analysis Overview of strategy
What is needed lattice parameters space group done simultaneously reflection positions
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Procedure for structure analysis Overview of strategy
What is needed lattice parameters space group done simultaneously need crystal system for size & shape of UC some info on symmetry also acquired reflection positions
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Procedure for structure analysis Overview of strategy
What is needed lattice parameters space group done simultaneously need crystal system for size & shape of UC some info on symmetry also acquired small no. reflections needed for crystal system and approx. LPs reflection positions
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Procedure for structure analysis Overview of strategy
What is needed lattice parameters space group done simultaneously need crystal system for size & shape of UC some info on symmetry also acquired small no. reflections needed for crystal system and approx. LPs large no. for precise LPs reflection positions
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Examples for LP detn Get a-value for each reflection Which one is correct? or best?
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Examples for LP detn Depends upon Consider effect of expt'l error on a-values at different s Braggs' law says error in d depends on error in sin
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Examples for LP detn Braggs' law says error in d depends on error in sin d eqn says error in a (cubic) depends on error in d d2 = a2/(h2 + k2 + l2) Thus, error in a depends on error in sin
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Precise LPs Best a-value at = 90° extrapolate a-values vs. cos2
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Precise LPs Best a-value at = 90° extrapolate a-values vs. cos2
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Precise LPs Best a-value at = 90° extrapolate a-values vs. cos2
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Precise LPs Another common extrapolation fcn - Nelson-Riley fcn
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Procedure for structure analysis
Overview of strategy LPs & SG done simultaneously need crystal system for size & shape of UC some info on symmetry also acquired systematic extinctions ––> Bravais lattice glide planes, screw axes space group - almost ex: Imma (centric) ––– Im21a (non-centric) get correct SG in final structure detn
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Techniques for structure detn
Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume)
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Techniques for structure detn
Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume) atom sizes
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Techniques for structure detn
Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume) atom sizes properties (centric?) isostructural materials (use databases) Ex: Al9Co3Ce do search on LPs
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Techniques for structure detn
Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume) atom sizes properties (centric?) isostructural materials (use databases) Ex: Al9Co3Ce do search on LPs
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Techniques for structure detn
Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume) atom sizes properties (centric?) isostructural materials (use databases) Ex: Al9Co3Ce do search on LPs Ga9Co3Nd (structure known) only need to "refine" Al9Co3Ce structure
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Techniques for structure detn
Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume) atom sizes properties (centric?) isostructural materials (use databases) Measure intensities of as many reflections as possible - correct for LP, absorption
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Techniques for structure detn
Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume) atom sizes properties (centric?) isostructural materials (use databases) Measure intensities of as many reflections as possible - correct for LP, absorption 3. Determine atom positions a. Patterson techniques b. heavy atom method
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Techniques for structure detn
3. Determine atom positions a. Patterson techniques b. heavy atom method
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Techniques for structure detn
3. Determine atom positions a. Patterson techniques b. heavy atom method c. isomorphous replacement, anomalous scattering
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Techniques for structure detn
3. Determine atom positions a. Patterson techniques b. heavy atom method c. isomorphous replacement, anomalous scattering d. direct methods Unitary structure factors
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Techniques for structure detn
3. Determine atom positions d. direct methods Unitary structure factors Example: center of symmetry Additional symmetry elements give other relationships
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Techniques for structure detn
Refine structure adjust positional parameters to get best agreement betwn Fobs & Fcalc use least squares technique FOM – the R factor
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Techniques for structure detn
Refine structure adjust positional parameters to get best agreement betwn Fobs & Fcalc use least squares technique FOM – the R factor Include thermal parameters for each atom
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Techniques for structure detn
Refine structure Include thermal parameters for each atom or
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Techniques for structure detn
Refine structure Include thermal parameters for each atom or For anisotropic vibration, thermal ellipsoid for each atom
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Techniques for structure detn
Rietveld refinement For powder diffraction data Not a structure determination procedure Whole pattern used Need to model peak shapes
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Techniques for structure detn
Rietveld refinement For powder diffraction data Not a structure determination procedure Whole pattern used Need to model peak shapes Many data, many parameters: lattice params, backgrd curve coeffs, positional params,temp factors, peak shape params, texture factor, etc.
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Techniques for structure detn
Rietveld refinement
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