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Hybridization
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Reverse transcription
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Complementary DNA
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cDNA library
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Polymerase chain reaction
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Real time PCR
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DNA chip
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Direct seeding Robot spotting InkJet technology – HP/Canon
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Photolithography - Affymetrix
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1,1 dimethoxytrityl
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GeneChip® System Probe Arrays (chips) Fluidics Station Software
Scanner Software Data Analysis
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The Dimensions of a GeneChip
* 5” 5” 5µm Millions of identical probes / feature Up to ~6,500,000 features / chip 1.28cm 1.28cm
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Photolithography - Febit/NimbleGen
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Nanogen biochip
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DNA sequencing
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Restriction Fragment Length Polymorphism
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Sensing methods in biochips
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Take home message Library: genomic DNA vs cDNA hybridization
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