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Supplemental Figure 1 A)

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1 Supplemental Figure 1 A) Correlation of cell lines for LysC/trypsin-digested dataset B) Correlation of cell lines for LysC-digested dataset 8 18 28 38 10 25 40 15 35 55 56 0.9518 0.2614 0.3415 0.2103 0.3227 0.8561 0.979 0.0484 0.0601 0.0352 0.0545 0.9791 0.9324 10 25 40 50 56 0.9618 0.2982 0.3474 0.269 0.3409 0.8904 -0.461 0.9748 -0.147 0.0724 0.0756 0.0571 0.0713 0.9769 0.9612 CAPAN 1 CAPAN 1 CAPAN 2 CAPAN 2 HPAC 1 HPAC 1 HPAC 2 HPAC 2 HPNE 1 HPNE 1 % of TMT signal HPNE 2 % of TMT signal HPNE 2 PANC1 1 PANC1 1 PANC1 2 PANC1 2 PaSC 1 PaSC 1 PaSC 2 PaSC 2 % of TMT signal % of TMT signal Supplemental Figure 1: Correlation matrices comparing the proteins quantified in each cell line within each dataset. Correlations were determined for the A) Lys-C/trypsin dataset and the B) the Lys-C dataset. The lower triangle shows the correlation plot for each pair of carbon sources, while the upper triangle shows the corresponding Pearson correlation (r).

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