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The Chemistry of Life: Atoms and Molecules
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Periodic Table 112 known elements
Pure substances that cannot be broken down into simpler chemical entities by ordinary chemical reactions. Periodic Table 112 known elements
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Major Elements Comprising the Biological Molecules of Living Things
Carbon Hydrogen Oxygen Nitrogen Phosphorus Sulfur
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Elements & Atoms An element is composed of atoms (0.1-1 nm in diameter) Atom cluster of small particles (proton, neutron, electron)
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Subatomic Particles Protons (p +) Neutrons (n o) Electrons (e -)
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Electron Shell Configurations of Atoms
proton neutron electron hydrogen atom helium atom carbon atom 1p, 0n, 1e- 2p, 2n, 2e- 6p, 6n, 6e-
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atomic number: number of p; #p = #e- 2He2e- and 2p
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atomic mass (atomic wt.): sum of masses of p+n
He 2p + 2n, atomic mass = 4 4 2He He p + n e-
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Carbon Atom C p = n = e- = Atomic number = Atomic mass =
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Isotope C atoms that differ in the number of neutrons 12 6 C 13 6 C 14 6 C C12 C13 C14 stable stable isotope unstable- radioactive isotope
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Two or more atoms held together by chemical bonds
Molecule Two or more atoms held together by chemical bonds Oxygen O2 Nitrogen N2 Ammonia NH3 Carbon Dioxide CO2 Water H2O Methane CH4 Glucose C6H12O6
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Compound Binding two or more different kinds of elements together NaCl + C6H12O6
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Compound Binding two or more different kinds of elements together NaCl CH4 C6H12O6
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Ion An atom that has either gained or lost electrons such that it exhibits a net charge Na+ Cl-
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Sodium (Na) Atom 11 P+ 12 No
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Sodium (Na+) Ion + 11 P+ 12 No
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Chlorine (Cl) Atom 17 P+ 18 No
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Chloride (Cl-) Ion _ 17 P+ 18 No
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Some Examples of Ions Hydrogen H+ Potassium K+ Fluoride F-
Calcium Ca+2 Magnesium Mg+2
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Complex Ions Hydroxide OH- Bicarbonate HCO3- Nitrate NO3-
Phosphate PO4-3 Ammonium NH4+ Acetate C2H3O2-
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Bond Types: Ionic Covalent Hydrogen
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Ionic Bonds Transfer of electron 11 P+ 12 No 17 P+ 18 No
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Covalent Bonding: electron sharing
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Covalent Bonding: electron sharing
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Hydrogen Bonding Between Water Molecules
Covalent bond
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Hydrogen Bonding Between Different Molecules
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Examples of Organic Molecules
Lipids Carbohydrates Proteins Nucleic acids
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Properties of Water High heat capacity-absorbs and releases large amounts of heat (land heats faster than water) High heat of vaporization- sweat, cooling mechanism Polarity solvent properties- universal solvent Reactivity- hydrolysis and condensation (dehydration)
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Polarity of Water Molecules
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Chemical Reactions A B reactant product
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Chemical Synthesis A + B AB
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Chemical Decomposition
AB A + B
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Chemical Rearrangement
AB + CD AC + BD
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Decomposition of Water
H2O OH- + H+ O O + H H H H Water molecule [H2O] Hydroxyl ion [HO-] Hydrogen ion [H+]
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pH “p” stands for potential and “H” stands for hydrogen
Refers to the potential of a substance to attract hydrogen ions (H+)
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Acids HCl H+ + Cl- Proton donor, i.e., they donate H+ ions
HCl is a strong acid with a pH 1-2 HCl H+ + Cl-
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Bases Na+ + OH- NaOH NH3 + H+ NH4 OH - + H+ H2O HCO3 +H+ H2CO3
Proton acceptor, i.e., they take up H+ ions NaOH is a strong base ~pH 12 Na+ + OH- NaOH NH3 + H+ NH4 OH - + H+ H2O HCO3 +H+ H2CO3
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Neutralization HCl + NaOH H2O + NaCl
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Buffer- resists dramatic changes in pH; ex
Buffer- resists dramatic changes in pH; ex. tums, rolaids…buffers stomach acid
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pH Scale Type of Solution pH Value Neutral 7 Acidic 0-6
0-14 Type of Solution pH Value Neutral 7 Acidic 0-6 Basic (alkaline) 8-14
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pH Scale Logarithmic scale blood
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Measuring pH
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pH of Coke
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Impact of Acid in our Body
- CO2 + H2O H2CO HCO 3 + H+ O2 Bicarbonate Carbonic acid Capillary Cell CO2 O2
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Impact of Acid in our Body
HCl pH 1-2
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Impact of Acid in our Body
pH 8
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Impact of Acid in the Ocean
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Inquiry How many neutrons in 7 N? 14
Of the following pH’s which is most acidic? 3. The symbols K, Na, C, and S are: 4. Which of the following are elements? water; sugar; table salt; the atmosphere 5. Which of the following are pure substances? wine; seawater; blood; iron 14
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