1. Connection of the scholarly work flow with the open science framework
Natalie K. Meyers
Center for Open Science |
Non-profit, 50 employees founded in 2013

2. Mission Increase openness, integrity, and reproducibility of scholarly research.
At the COS, we’re interested in finding ways to support researchers in implementing better research practices and to increase the openness, integrity, transparency, and the reproducibility of scientific research.

3. Technology to enable change Training to enact change
Incentives to embrace change
We have three main areas of operation.
We build free, open source infestructure to support open research practices,
building a community that helps to incentives good practices,
and performing meta-science research to investigate how changes in scientific practice affect publishing, results, and scientific findings.

4. Infrastructure Metascience Community
We have three main areas of activity to address the problems with incentives and personal barriers : 1) enabling metascience research, 2) building community, and 3) developing infrastructure in the form of OSF and its companion integrations .
Community

5. Infrastructure
The free, open source Open Science Framework (OSF; stores and connects content from across the research workflow (e.g., materials, code, datasets, and publications).

6. OSF Analyze Data Search/ Write Discovery Report Develop Analyze Idea
Respect existing workflow
infrastructure - OSF
major arm of COS
Workflow software to help researchers organize, archive, and connect
Built flexibly so nothing is mandated: tools to support your individual workflow
provides altmetrics
Design
Study
Store
Data
Collect
Data

7. There’s more to it than sharing of discrete objects
There’s more to it than sharing of discrete objects. Think about using this as an opportunity to increase transparency by capturing the entire workflow, and to do so while connecting tools and services that make up the parts of the workflow, not requiring people to change all of their practices at once, and providing immediate efficiencies and value to the researcher AS they comply with requirements.
Easy, right? Obviously not.

8. There’s more to it than sharing of discrete objects
There’s more to it than sharing of discrete objects. Think about using this as an opportunity to increase transparency by capturing the entire workflow, and to do so while connecting tools and services that make up the parts of the workflow, not requiring people to change all of their practices at once, and providing immediate efficiencies and value to the researcher AS they comply with requirements.
Easy, right? Obviously not.
OpenSesame

9. There’s more to it than sharing of discrete objects
There’s more to it than sharing of discrete objects. Think about using this as an opportunity to increase transparency by capturing the entire workflow, and to do so while connecting tools and services that make up the parts of the workflow, not requiring people to change all of their practices at once, and providing immediate efficiencies and value to the researcher AS they comply with requirements.
Easy, right? Obviously not.
OpenSesame

10. CurateND Institutional Repository OSF Integration
Joint effort w/Johns Hopkins and University of Notre Dame
Archiving Research Data into Hydra through the Open Science Framework (OSF)
Given at Hydra Connect 2016 Oct Available:
Presentation - Rick Johnson, Don Brower, Sayeed Choudry, Elliot Metsger
Archiving Research Data into Hydra through the Open Science Framework (OSF) - A look at initial work of Notre Dame and Johns Hopkins to archive research projects from the OSF into Fedora and Hydra repositories, and first implementation of a Fedora Research Object Model.
This plugs into a service offering of the Center for for Open Science, OSF for Institutions (OSF4I).
Contact: Rick Johnson

11. the Active Research Lifecycle using the Open Science Framework
Bringing Fedora into
the Active Research Lifecycle using
the Open Science Framework
Rick Johnson & Don Brower (Notre Dame)
Sayeed Choudhury & Elliot Metsger (Johns Hopkins)
Hydra Connect 2016, Boston Public Library

12. Partnerships!

13. Data Conservancy components
Quick overview of each component and importance of integration into OSF
(i.e. why this work is important to JHU/context)
Emphasis on Fedora aspect (given the conference crowd)

14. Data Model Maps native Open Science Framework (OSF) model to RDF
Experimental
Expressed as linked data
Manifested as Fedora 4 resources
Community-based research object data model?

15. Open Science Framework Packaging Tool
Produces graph of objects as linked data
Includes binary content (files, wiki content)
Packaged in a Bag
Per Data Conservancy packaging specification
Supports packaging of OSF Projects and Registrations
Registrations could be considered as a publication event
Optionally ingested into Fedora

16. NDS OSF Dashboard integration
Contact:
Ian Taylor
Describe the past years’ efforts on dashboard
bitbucket.org/nds-org/nds-dashboard

17. The Craft App
CRAFT Project as described in IWSG session: Composable EmberJs Dashboards Using OSF
By Ian Taylor and Jarek Nabryski, University of Notre Dame

18. The CRAFT Project We need to support flows like this:
Source (VHDL / Verilog)
We need to support flows like this:
Functional Verification
Cadence Incisive Simulator
Test Vectors
Verified RTL
Libraries
Synthesis
Synopsys Design Compiler
Timing Constraints
Netlist
Timing Analysis
Synopsys Primetime
Cadence Conformal
Logical Equivalence Check
Place and Route
Cadence 1st Encounter
Layout
Foundry PDK, Rule Decks, etc
Backend Checks (DRC, LVS, etc)
Mentor Calibre
Verified Layout
ASIC Design
Ready-to-Fab Chip Layout

19. OSF Why Use the OSF? And a full REST API – Django REST Framework
Planned
OSF Has a lot of tools integrated
And integrated wiki, tags, file browsers, comments, audit trails, data analytics,
And a full REST API – Django REST Framework
And an EmberJS binding to the models for REST API

20. Craft and the OSF Architecture
OSF provides project based access and tooling surrounding projects
Custom API/database provides custom data/flows and search capabilities
ND is co-developing OSF with the Center for Open Science (MOU) and will host CRAFT’s own OSF instance at ND

21. Combing OSF, REST API and Craft App

22. Questions: natalie@cos.io
Find this presentation at
Questions: