1. Daphnia Genome Preview at wFleaBase.org
Daphnia Genomics Consortium, Jan. 2006
Don Gilbert,

2. D.pulex scaffold_1 Map

3. D.p. Genome Preview D.pulex log50 draft assembly (20050510)
Annotations
eukaryote proteomes, gene predictions, Daphnia EST, microsatellites
Genome Search : NCBI BLAST
Genome Data Mining : BioMart
Genome Maps : GBrowse

4. Proteome Annotations

5. Annotations Gene Homology Gene Predictions Daphnia Reagent DNA
Nine well-annotated proteomes: Yeast, Worm, Mosquito, Fruitfly, Bee, Zebrafish, Mouse, Human, Arabidopsis
BLAST the Daphnia genome at TeraGrid.org
Gene Predictions
SNAP - minimal, fly-gene-model
Daphnia Reagent DNA
ESTs, microsatellites,markers
Collate to Gene Finding Format (GFF)

6. BioMart Filter

7. BioMart Output

8. Tables for
Spreadsheets
FastA
BioMart Output

9. GBrowse: Homeobox region

10. GBrowse: Usage

11. GBrowse: Usage

12. GBrowse: Gene Evidence

13. Apollo, Cmap, GMOD Tools Improving automated annotation is work
Jamboree of Experts will do much
Researchers can contribute annotations
Apollo editor for Genome Annotation
View and edit gene models: set start, stop codons, splicing
Tools for BLAST, aligning, and sequence checking
Edits go to Daphnia Chado Database
Cmap Comparative Maps (genetic, physical, genome)
More tools developing at

14. Apollo Gene Annotation

15. Thanks to these folks IU and national TeraGrid group for the CPUs
JGI and DGC groups for the genome
GMOD project developers for the tools