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Simulator for Infectious Diseases
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Introduction Stochastic simulator for epidemic spread
Develops contacts between census blocks Simulation based on population, distance between census blocks, infection parameters.
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Overview Census block level
Infectious contacts generated for an age group in a census block. Disease parameters are user defined. Variable number of age groups. JAVA / postgresql
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Simulator Design Census Block Grid Contacts Disease Age-Groups
Census Data Reader
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Census Block Coordinates Population Age Groups S, R E, I on each day
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Grid No of Census Blocks (m*n) Details of Census Blocks Disease
Census Information for each block
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Disease Infectious Period Exposed Period Infectivity
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Age Groups S, E, I , R Contact Rate for the age group Affinity
Mobility
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Contacts In each block, infectious contacts generated for each age group. Contacts can be intra-block or inter-block. Inter-block contacts made with external blocks, using interaction coefficient Each blocks statistics updated at the end of time unit
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Intra-block Contacts Fraction of Intra-block contacts
Directly proportional to affinity Inversely proportional to mobility frac = a*popBlock/((a-1)*popBlock + popTot); where, a = affinity / mobility
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Infectious Contacts Infectious Contacts generated by each age group function of Group's contact rate Infectious population in that age group Proportion of susceptibles in the block Infectivity of the epidemic infectiousIntraContacts = fracIntraBlock*Infectious*ageContactRate*Diseas eInfectivity)*(susceptibles/population)
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Choosing Blocks to contact...
Block to be contacted chosen randomly. No. of contacts with that block depends on interaction coefficient InteractionCoeff = Pop_this_block*pop_contacted_block/distance_bet_ blocks Avg_IC for the contacted block
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Census Data Census block data read from census database
Demographics like age are read block by block. Each block is assigned coordinates in the grid. Postgresql used to query database.
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Work to be done... Demographic currently used – age
Socio-economic status, gender, race etc. to be incorporated into the simulator Visualization
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