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Tutorial on GRID computing
Giorgio Maggi INFN and Politecnico di Bari
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LIBI International Laboratory of Bioinformatics
A Virtual Laboratory for composing and executing complex experiments in Bioinformatics Project Coordinator : Prof. Cecilia Saccone Project funded by the MIUR (Italian Ministry for Education, University and Research), F.I.R.B. 2003, under grant RBLA039M7M.
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LIBI partners Technological RU’s (provide the platform):
University of Salento – SPACI Consortium, Lecce. Prof. Giovanni Aloisio INFN – Sections of Bari, Catania and Padova and CNAF-Bologna Dr. Mirco Mazzucato IBM Italia S.p.A - IBM Innovation Lab, Bari Dr. Luigi Di Pace CINECA – Bologna Dr. Elda Rossi Scientific RU’s (use the platform): CNR – Institute for Biomedical Technologies, Bari Prof. Cecilia Saccone, project coordinator University of Bologna – Biocomputing Group, Bologna Prof. Rita Casadio University of Milano Prof. Graziano Pesole Centro di Biomedicina Molecolare – Trieste Prof. Claudio Schneider
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The LIBI architecture a) Computing Virtualization layer:
a heterogeneous computing environment able to integrate and virtualize the access to different production Grids (gLite, Unicore and Globus) and HPC resources; b) Databases & Data Virtualization layer: a suite of bioinformatics databases and resources, integrated in a federated approach, including private and public data. Data are integrated by many services and tools and are accessible from the virtualization layer; d) Bioinformatics Applications layer: a number of specialized bioinformatics applications (Case Studies), targeting scientific problems, built by mashing-up services, tools, data and computing resources.
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More than 17000 (5000 in average) CPUs reachable with the “biomed” VO
CSTminer More than (5000 in average) CPUs reachable with the “biomed” VO GAF MrBayes ASPic EGEE INFRASTRUCTURE JST More than 1500 (500 in average) CPUs reachable with the “bio” and “libi” VO’s BLAST PAML FT-COMAR LIBI Portal APPsGUI WF GUI JST GUI Meta Scheduler SPACI INFRASTRUCTURE LIBI USER PSI-BLAST DEISA INFRASTRUCTURE MrBayes PatSearch Gromacs AntiHunter 5
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