1. Framework Curation and Loading for tranSMART v1.0 - FC&L4tranSMART
Charlotte Raillère
Sanofi R&D IS
FC&L4tranSMART

2. Current clinical data integration
Data in a tab-delimited format
Word mapping file
Columns mapping file
Kettle
Integrated data
FC&L4tranSMART |

3. FC&L4tranSMART v1.0 presentation
Developed by Charlotte Raillere from Sanofi R&D IS
Open source (GPL v3)
Audience:
Curators
ETL analysts
Scope:
Clinical data
Gene expression data
FC&L4tranSMART |

4. FC&L4tranSMART v1.0 presentation
Aims:
User-friendly
Make easier curation and loading for tranSMART
Load study metadata
Help for creation or modification of mapping files
Loading in a click data from mapping files
Monitoring and quality control
File viewer
Delete a study from database
FC&L4tranSMART |

5. Technical overview Application implemented in Java
With Eclipse Rich Client Platform (RCP)
Use of java libraries:
Kettle API
JDBC (database connection)
Use of Kettle jobs developed by Recombinant
FC&L4tranSMART |

6. FC&L4tranSMART functionalities
Demo
Application and code will be available soon in the tranSMART-ETL GitHub repository
FC&L4tranSMART |

7. Thank you
FC&L4tranSMART |