Presentation is loading. Please wait.

Presentation is loading. Please wait.

Figure 1. Example of a template search of expression data: screenshot of the ‘SpellDataSet→SpellScore→Genes’ template showing the SpellExpression Score.

Published byAugust Eaton Modified over 6 years ago

Similar presentations

Presentation on theme: "Figure 1. Example of a template search of expression data: screenshot of the ‘SpellDataSet→SpellScore→Genes’ template showing the SpellExpression Score."— Presentation transcript:

1 Figure 1. Example of a template search of expression data: screenshot of the ‘SpellDataSet→SpellScore→Genes’ template showing the SpellExpression Score constrained to be between ≥3 and ≤−3, and the SpellDatasetCondition name constrained to be ‘=*sorbitol*’. Switching ON the other parameters such as ‘SpellDataSet author’ or ‘SpellDataset pubmedID’ will allow constraint of those values. The ‘Show Results’ button runs the query. This template is prepopulated with certain constraints, but clicking on the ‘Edit Query’ button will bring up the Model browser, which offers more options for query constraints and output formats. From: YeastMine—an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit Database (Oxford). 2012;2012. doi: /database/bar062 Database (Oxford) | © The Author(s) Published by Oxford University Press.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

2 Figure 2. An example of editing a template using the Query Builder
Figure 2. An example of editing a template using the Query Builder. The Model Browser (on the left) displays the attributes for the GOAnnotation object in the Gene→GO Terms template. Clicking on the ‘CONSTRAIN→’ button next to the namespace box allows one to constrain on the ontology namespace. The Query Overview (on the right) shows the ontology namespace being restricted to the value ‘Biological Process’. From: YeastMine—an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit Database (Oxford). 2012;2012. doi: /database/bar062 Database (Oxford) | © The Author(s) Published by Oxford University Press.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Download ppt "Figure 1. Example of a template search of expression data: screenshot of the ‘SpellDataSet→SpellScore→Genes’ template showing the SpellExpression Score."

Similar presentations

From: The Pfam protein families database

From: The Pfam protein families database
Table 1 Patient characteristics of attendees of the influenza vaccination, irrespective of AF status From: Yield of screening for atrial fibrillation in.

Table 1 Patient characteristics of attendees of the influenza vaccination, irrespective of AF status From: Yield of screening for atrial fibrillation in.
Fig. 1. Significant clusters in the amygdala and dlPFC, four-way interaction effect (group by valence by temperature by time), small volume corrected.

Fig. 1. Significant clusters in the amygdala and dlPFC, four-way interaction effect (group by valence by temperature by time), small volume corrected.
Figure 3: (a and b) Preoperative contrast-eCT

Figure 3: (a and b) Preoperative contrast-eCT
Fig. 8 The two cases for the terminal edge e<sub>0</sub>

Fig. 8 The two cases for the terminal edge e<sub>0</sub>
Figure 1 Proportion of criteria chosen (as percentages, grouped into issues). From: Developing national obesity policy in middle-income countries: a case.

Figure 1 Proportion of criteria chosen (as percentages, grouped into issues). From: Developing national obesity policy in middle-income countries: a case.
Figure 2. Number of cases required in a Mendelian randomization analysis with a binary outcome and a single instrumental variable for 80% power with a.

Figure 2. Number of cases required in a Mendelian randomization analysis with a binary outcome and a single instrumental variable for 80% power with a.
J Exp Bot. 2017;68(17): doi: /jxb/erx352

J Exp Bot. 2017;68(17): doi: /jxb/erx352
Figure 1. The scheme of RCAS

Figure 1. The scheme of RCAS
Figure 2. Chronic kidney disease risk tool application.

Figure 2. Chronic kidney disease risk tool application.
Figure 1. Fertility and gender equity: three hypothetical dynamics according to the level of the Gender Gap over time. Note: the three scenarios differ.

Figure 1. Fertility and gender equity: three hypothetical dynamics according to the level of the Gender Gap over time. Note: the three scenarios differ.
Ex.1 (a) (i) opening of Besard; (ii) opening of Fuhrmann, (b) opening of Banchieri From: Musical texts and information retrieval: the case of the early.

Ex.1 (a) (i) opening of Besard; (ii) opening of Fuhrmann, (b) opening of Banchieri From: Musical texts and information retrieval: the case of the early.
Fig 1 The CONSORT participant flow diagram for primary endpoints.

Fig 1 The CONSORT participant flow diagram for primary endpoints.
Figure 3: MetaLIMS sample input.

Figure 3: MetaLIMS sample input.
Figure 1 An overview of the study design.

Figure 1 An overview of the study design.
Figure 1 Study flow chart.

Figure 1 Study flow chart.
Figure 5: Three-dimensional reconstruction of the CT scan showing the trapped air in the head and neck region. From: Distinct subcutaneous emphysema following.

Figure 5: Three-dimensional reconstruction of the CT scan showing the trapped air in the head and neck region. From: Distinct subcutaneous emphysema following.
Figure 2. The graphic integration of CNAs with altered expression genes in lung AD and SCC. The red lines represent the amplification regions for CNA and.

Figure 2. The graphic integration of CNAs with altered expression genes in lung AD and SCC. The red lines represent the amplification regions for CNA and.
From: Learning by Working in Big Cities

From: Learning by Working in Big Cities
Figure 1. The handshapes for letter Q and digit 6 from the Swedish manual alphabet and manual numeral systems. From: Computerized Sign Language-Based Literacy.

Figure 1. The handshapes for letter Q and digit 6 from the Swedish manual alphabet and manual numeral systems. From: Computerized Sign Language-Based Literacy.

Similar presentations

Ads by Google