Gram positive rods.

Gram positive rods

Gram Positive Bacilli Gram positive rods Spore forming
Non spore forming Anaerobic Aerobic Clostridium spp Bacillus spp Corynebacterium

Clinically important Gram positive bacilli
Spore forming Bacillus Clostridium Non spore forming 1.Corynebacterium 2.Listeria 3.Lactobacillus Bacilli w/ branching filaments 1.Actinomyces 2.Nocardia

Gram positive rods Medically, Bacillus, Corynebacterium and Listeria are highly pathogenic bacteria which causes of a variety of currently uncommon human diseases. Their existence poses a continued threat to human survival – deaths caused by diptheria (old killer diseases) or potential bioterrorism of anthrax.

Bacillus Saprophytic *B.cereus B.subtilis B.megaterium B.Circulans
With the exception of one species, the genus bacillus are low virulence saprophytes that are widespread in the environment. Saprophytic *B.cereus B.subtilis B.megaterium B.Circulans Pathogenic B.anthracis

General Characters of Bacillus spp
Very large Gram positive bacilli 1-1.2 µm in width x 3-5µm in length Arranged in long chains Motile except B. anthracis Spore forming (outside the host) Capsulated (inside the host) Non Fastidious Facultative anaerobic Breakdown glucose by oxidative and fermentative i.e. O+/F+ Catalase positive (diff from clostridium) It is found in soil habitats

1.BACILLUS Bacillus anthracis Bacillus cereus
Human pathogen Isolation also considered to be clinically significant Zoonosis Bacillus cereus Environmental organism Contaminates food Common cause of food poisoning Bacillus (geobacilus) stearothermophilus Tolerates very high temperatures Used for quality control of autoclaves

B.anthracis It is aerobic and G+ve,
square-ended (rectangular)bacilli with oval central spores non motile, capsulated, arranged singly or in short chains, the organism grows well on blood agar. Hemolysis is uncommon (common with saprophytic bacilli). Colonies characterized by rough uneven surface with multiple curled extensions. The colony is described as "Medusa- head“. The colony is composed of continuous chain of bacilli. By G. stain, some spores will be seen in between the vegetative cells and these spores appear as empty spaces without stain. The spores usually resist boiling, some chemicals & dry heat of 140°C but they are destroyed by autoclaving (moist heat) for 15 min.

B.anthracis Colony characteristics
the organism grows well on blood agar. Large (4-5mm) Opaque/white/gray Forms capsule at 37º C, 5-20% CO2

B. anthracis Biochemical reaction Catalase +ve
Reduce nitrates to nitrites.

Survival factors for B. anthracis
Environmental Survival Spores are hardy Resistant to drying, boiling <10 minutes Survive for years in soil Still viable for decades in perma-frost(soil at or below freezing point of water) Favorable soil factors for spore viability High moisture Organic content Alkaline pH High calcium concentration

Virulence Virulence Factors All necessary for full virulence
Polysaccharide somatic antigen Composed of N-acetylglucoseamine and D-galactose Capsule (plasmid pXO2) Capsular polypeptide consisting of D-glutamic acid has antiphagocytic properties => B. anthracis that does not produce capsule is not virulent Toxin(plasmid pXO1) Protective Antigen Edema Factor Lethal Factor

Components of anthrax toxin
Protective Antigen Binds Edema Factor to form Edema Toxin Facilitates entry of Edema Toxin into cells Edema Factor Massive edema by increasing intracellular cAMP Also inhibits neutrophil function Lethal Factor Stimulates macrophage release of TNF-α, IL-1β Initiates cascade of events leading to sepsis Cause of death

Anthrax produces 3 potentially deadly toxins that can take effect even after the bacteria has been annihilated by antibiotics The first toxin, protective antigen, paves way for the second toxin, lethal factor to enter cells. As its name implies, lethal factor then kills the cells. As the cells die, they release inflammatory agents that bring on septic shock then death Third toxin, edema toxin, cause fluid to accumulate in the lungs or other parts of the body.Ef is doubly dangerous and can be lethal itself

Types of anthrax There are three clinical types of anthrax based on the route of infection 1-Skin or cutaneous anthrax (Malignant pustule) 2- Respiratory or pulmonary anthrax (wool sorters' disease) 3- Intestinal anthrax (rare) in primitive or poor society.

Epidemiology All ages and genders affected Occurs worldwide
Endemic areas - Africa, Asia True incidence not known World 20, ,000 in 1958 U.S. 235 total reported cases 18 cases inhalational since 1900, last one 1976 Until 2001, last previous case cutaneous 1992

Epidemiology Mortality Inhalational 86-100% (despite treatment)
Era of crude intensive supportive care Cutaneous <5% (treated) – 20% (untreated) GI approaches 100%

Epidemiology Incubation Period Time from exposure to symptoms
Very variable for inhalational 2-43 days reported Theoretically may be up to 100 days Delayed germination of spores

Epidemiology Human cases – historical risk factors Agricultural
Exposure to livestock Occupational Exposure to wool and hides Woolsorter’s disease = inhalational anthrax Rarely laboratory-acquired

Epidemiology Transmission No human-to-human Naturally occurring cases
Skin exposure Ingestion Airborne Bioterrorism Aerosol (likely) Small volume powder (possible) Foodborne (unlikely)

Epidemiology Transmission Inhalational
Handling hides/skins of infected animals Microbiology laboratory Intentional aerosol release Small volume powdered form In letters, packages, etc Questionable risk, probably small

Epidemiology Transmission Cutaneous
Handling hides/skins of infected animals Bites from arthropods (very rare) Handling powdered form in letters, etc. Intentional aerosol release May see some cutaneous if large-scale

Epidemiology Transmission Gastrointestinal
Ingestion of meat from infected animal Ingestion of intentionally contaminated food Not likely in large scale Spores not as viable in large volumes of water Ingestion from powder-contaminated hands Inhalational of spores on particles >5 m Land in oropharynx

Pathogenesis Anthrax is a zoonosis. The portal of entry is the respiratory tract. Through a cut in skin or the mouth, spores enter the human body. They lodge in one place and start to germinate. They will produce toxins & enzymes till hemorrhage and oedema are produced. Once the organism looses its capsule, it will die easily because it looses its virulence.

Pathogenesis and clinical presentations Gastrointestinal anthrax
Cutaneous anthrax About 20% mortality Virulence factors Capsule (antiphagocytic) Toxin (oedema & death) Inhalation anthrax High mortality Gastrointestinal anthrax High mortality

Pathogenesis Disease requires entry of spores into body
Exposure does not always cause disease Inoculation dose Route of entry Host immune status May depend on pathogen strain characteristics

Pathogenesis Inhalational Spores on particles 1-5 m
Inhaled and deposited into alveoli Estimated LD50 = 2500 – 55,000 spores Dose required for lethal infection in 50% exposed Contained in imperceptibly small volume

Pathogenesis Inhalational Phagocytosed by alveolar macrophages
Migration to mediastinal/hilar lymph nodes Germination into vegetative bacilli Triggered by nutrient-rich environment May be delayed up to 60 days Factors not completely understood Dose, host factors likely play a role Antibiotic exposure may contribute Delayed germination after antibiotic suppression

Pathogenesis Inhalational Vegetative bacillus is the virulent phase
Active toxin production Hemorrhagic necrotizing mediastinitis Hallmark of inhalational anthrax Manifests as widened mediastinum on CXR Does NOT cause pneumonia Followed by high-grade bacteremia Seeding of multiple organs, including meninges

Pathogenesis Inhalational Toxin production
Has usually begun by time of early symptoms Stimulates cascade of inflammatory mediators Sepsis Multiorgan failure DIC(disseminated intravascular coagulation) Eventual cause of death Symptoms mark critical mass of bacterial burden Usually irreversible by this time Clearance of bacteria unhelpful as toxin-mediated Early research on antitoxin promising

Pathogenesis Cutaneous Spores in contact with skin Germination in skin
Entry through visible cuts or microtrauma Germination in skin Disease begins following germination Toxin production Local edema, erythema, necrosis, lymphocytic infiltrate No abscess or suppurative lesions Eventual eschar(a dry,dark scab or falling away of dead skin typically caused by infection with anthrax) formation

Eschar

Clinical findings Skin anthrax: a papule first develops within hrs after entry of the organisms or spores through a scratch. This papule rapidly changes into a vesicle, then a pustule, and finally a necrotic ulcer from which the infection may disseminate. Giving rise to septicemia. Respiratory anthrax: In inhalational anthrax , early manifestations may be mediastanitis, sepsis, meningitis, or hemorrhagic pulmonary edema. Hemorrhagic pneumonia with shock is a terminal event. Intestinal anthrax: Ingestion of spores cause severe enteritis accompanied by bloody diarrhea with high fatality. Hence, all types of anthrax, if not treated in time, progress to septicemia and death occurs from overwhelming infection.

Clinical Features Laboratory Findings Radiographic Findings
Gram positive bacilli in direct blood smear Electrolyte imbalances common Radiographic Findings Widened mediastinum Minimal or no infiltrates Can appear during prodrome phase

Diagnosis Early diagnosis is difficult Non specific symptoms
Initially mild No readily available rapid specific tests

Diagnosis Presumptive diagnosis History of possible exposure
Typical signs & symptoms Rapidly progressing nonspecific illness Widened mediastinum on CXR Large Gram+ bacilli from specimens Can be seen on Gram stain if high-grade bacteremia Appropriate colonial morphology Necrotizing mediastinitis, meningitis at autopsy

Diagnosis Definitive diagnosis Direct culture on standard blood agar
Gold standard, widely available Alert lab to work up Gram + bacilli if found 6-24 hours to grow Sensitivity depends on severity, prior antibiotic Blood, fluid from skin lesions, pleural fluid, CSF, ascites Sputum unlikely to be helpful (not a pneumonia) Very high specificity if non-motile, non-hemolytic Requires biochemical tests for >99% confirmation Available at Reference laboratories

Diagnosis Definitive diagnosis Rapid confirmatory tests
Role is to confirm if cultures are negative In the US, available currently only at CDC Polymerase Chain Reaction (PCR) Hi sensitivity and specificity Detects DNA Viable bacteria/spores not required Immunohistochemical stains Most clinical specimens can be used

Diagnosis Other diagnostic tests Anthraxin skin test
Chemical extract of nonpathogenic B. anthracis Subdermal injection 82% sensitivity for cases within 3 days symptoms 99% sensitivity 4 weeks after symptom onset Not much experience with use in U.S. – not used

Diagnosis Testing for exposure Nasal swabs Serologies
Can detect spores prior to illness Currently used only as epidemiologic tool Decision for PEP based on exposure risk May be useful for antibiotic sensitivity in exposed Culture on standard media Swabs of nares and facial skin Serologies May be useful from epidemiologic standpoint Investigational – only available at CDC

Diagnosis Environmental samples Suspicious powders Air sampling
Must be sent to reference laboratories as part of epidemiologic/criminal investigation Assessed using cultures, stains, PCR Air sampling First responders Handheld immunoassays Not validated Useful for detecting massive contamination

Mcfadyeans Reaction A special staining reaction, demonstrating a pink capsule around a blue cell after staining with methylene blue which is used as presumptive diagnosis for anthrax in a blood smear

Treatment Immediately treat presumptive cases
Prior to confirmation Rapid antibiotics may improve survival Differentiate between cases and exposed Cases Potentially exposed with any signs/symptoms Exposed Potentially exposed but asymptomatic Provide Post-Exposure Prophylaxis

Treatment Hospitalization IV antibiotics Intensive supportive care
Empiric until sensitivities are known Intensive supportive care Electrolyte and acid-base imbalances Mechanical ventilation Hemodynamic support

Treatment Antibiotic selection Naturally occurring strains
Rare penicillin resistance, but inducible β-lactamase Penicillins, aminoglycosides, tetracyclines, erythromycin, chloramphenicol have been effective Ciprofloxacin very effective in vitro, animal studies Other fluoroquinolones probably effective Engineered strains Known penicillin, tetracycline resistance Highly resistant strains = mortality of untreated

Treatment Alternative antibiotics Ineffective antibiotics
If susceptible, or cipro/doxy not possible Penicillin*, amoxicillin *FDA Approved Gentamicin, streptomycin Erythromycin, chloramphenicol Ineffective antibiotics Trimethoprim/Sulfamethoxazole Third generation cephalosporins

Treatment Susceptibility testing should be done
Narrow antibiotic if possible Must be cautious Multiple strains with engineered resistance to different antibiotics may be coinfecting Watch for clinical response after switching antibiotic

Treatment Other therapies Passive immunization Antitoxin
Anthrax immunoglobulin from horse serum Risk of serum sickness Antitoxin Mutated Protective Antigen Blocks cell entry of toxin Still immunogenic, could be an alternative vaccine Animal models promising

Postexposure Prophylaxis
Who should receive PEP? Anyone exposed to anthrax Not for contacts of cases, unless also exposed Empiric antibiotic therapy Vaccination

Prevention Vaccine Anthrax Vaccine Adsorbed (AVA) Supply
Limited, controlled by CDC Production problems Single producer – Bioport, Michigan Failed FDA standards None produced since 1998

Prevention Vaccine Inactivated, cell-free Adsorbed onto Al(OH)3
Protective Antigen Immunogenic component Necessary but not sufficient

Prevention Vaccine – Effective and Safe Efficacy
>95% protection vs. aerosol in animal models >90% vs. cutaneous in humans Older vaccine that was less immunogenic Protection vs inhalational but too few cases to confirm

Anthrax –prevention Prevention
Vaccination of animal herds Proper disposal of carcasses Active immunisation with live attenuated bacilli

Bacillus cereus

Bacillus cereus Large, motile, saprophytic bacillus
Heat resistant spores Pre formed heat and acid stable toxin (Emetic syndrome) Heat labile enterotoxin (Diarrhoeal disease) Lab diagnosis – Demonstation of large number of bacilli in food

B. cereus B. cereus is a normal inhabitant of soil
Also isolated from food such as grains and spices B. cereus causes two types of food poisoning Emetic form or short incubation: It is caused by heat stable enterotoxin Nausea, vomiting and abdominal cramps Incubation period of 1-6 hrs It resembles S. aureus food poisoning Diarrheal form or long incubation: It is caused by heat labile enterotoxin Abdominal cramps and diarrhea Incubation period of 8-16 hrs Diarrhea may be a small volume or profuse and watery It resembles food poisoning caused by Cl. perfringens In either type, the illness usually lasts < 24 hrs after onset

Differential characteristics of B. anthracis & B. cereus
-hemolysis No hemolysis Hemolysis Motile Non-Motile Motility

Nonspore forming G +ve bacilli
Corynebacterium Listeria Erisipelothrix Actinomycytes

Corynebacterium spp Gram positive bacilli, with characteristic morphology (club shaped and beaded) Non motile Non spore forming Non capsulated Facultative anaerobic (A facultative anaerobe is a microorganism that can exist regardless of whether there is molecular oxygen. When there is oxygen, the anaerobe creates ATP using anaerobic respiration. If oxygen is not present, then the organism ferments) Breakdown glucose by oxidative and fermentative i.e. O+/F+ C. diphtheriae is fastidious while diphtheriods are non-fastidious Catalase positive Oxidase negative

Corynebacterium diphtheriae
Toxigenicity Infection of non toxigenic species with bacteriophage can lead to toxigenicity (offsprings become lysogenic and toxigenic) Invasiveness is under the control of the bacterial genes unlike toxigenicity which is controlled by the phage gene.

Species of Corynebacteria
Corynebacterium Pathogenic C. diphtheriae Commensal "Diphtheriods" C. hofmannii, C. xerosis, C. acne C. diphtheriae is the only pathogenic members of this genus Normal flora of RT, urethra, vagina, Skin

Diphtheria Cased by C. diphtheriae
Mycocarditis, neuroitis, palate perforation Acute, Toxin mediated Recovery or complication & death (if more toxin absorbed) Childhood disease affect upper respiratory tract Diphtheria Respiratory obstruction due to extensive membrane formation Transmitted by droplet infection 2-6 days I.P. Sore throat, Pharyngitis 2-3 days, Bluish white adherent pseudo membrane

Diagnosis of diphtheria
Clinical Diagnosis Laboratory Diagnosis Specific treatment must be never delayed for laboratory results To confirm the clinical manifestation

Diagnosis of diphtheria
Diagnosis of case Diagnosis of carrier Symptomatic patient Asymptomatic

Laboratory diagnosis of case
Specimen: A throat swap Culture: The swap is inoculated on Loeffler's serum medium and/or on blood tellurite agar aerobically at 37C for 24. On Loeffler's serum medium: Corynebacteria grow much more readily than other respiratory pathogens Used to enhance the characteristic microscopical appearance of corynebacteria The colonies of C. diphtheriae are small, granular, grey, smooth, and creamy with irregular edges Loefflers serum

Loefflers serum medium
Developed by Friedrich Loeffler in 1887 Loefflers medium is used to grow corynebacteria Most recent modification by Buck in 1940 to enhance the growth of C. diphtheria Consists of Beef serum, heart muscle and animal tissue peptone, sodium chloride, dextrose and egg. The primary value of Loeffler Medium is in the growth and morphological characterization of members of the genus Corynebacterium; enhances the formation of metachromatic granules within the cells of the organism.

Cultural characteristics
On blood tellurite agar (Mcloed’s blood agar) It is selective medium for isolation of C. diphtheriae (Potassium tellurite) 3 biotypes of C. diphtheriae are characterized on BTA i.e. Gravis, mitis and intermedius biotypes The most severe disease is associated with the gravis biotype Colony of gravis biotype is large, non-hemolytic & grey. Colonies of mitis biotype are small, hemolytic and black Colonies of intemedius biotype are intermediate in size, non-hemolytic with black center & grey margin.

Morphology Stain Gram +ve, nonspore forming nonmotile bacilli
Club-shaped (Coryne= club) arranged at acute angles or parallel to each other (Chinese letters appearance) Beaded (metachromatic granules) Stain Gram stain: C. diphteriae are gram positive bacilli arranged in Chinese letters form often club shaped Polychrome methylene blue stain: C. diphteriae appears beaded due to the presence of intercellular “Metachromatic or volutin" granules By stain, the granules appear red while the rest of organism appears blue.

Diagnosis – clinical. Lab confirmation Blood agar

Gram stain of C. diphtheriae
C. diphtheriae on BTA

Biochemical Reaction All Corynebacterium species are catalase positive (Also, Staphylococcus and Bacillus species are catalase positive)

2- Carbohydrate Fermentation Test:
Principle: Each species of corynebacteria has its specific carbohydrate fermentation pattern C.diphtheriae can be differentiated from other Corynebacterium species by fermentation of glucose and maltose but not sucrose with production of acid only Procedure: Inoculate three tubes of carbohydrate fermentation medium (broth containing one type of sugar and phenol red as the pH indicator) with the test organism Glucose Maltose Sucrose Incubate the tubes at 37oC for 24 hrs.

Results: Sugar fermentation can be indicated by change of color of the medium from red to yellow due to formation of acid which decrease the pH Glucose Maltose Sucrose Glucose Maltose Sucrose +ve +ve +ve +ve +ve - ve C. diphtheriae C. xerosis

I- Isolation of organism II- Detection of exotoxin
Diagnosis of Carrier I- Isolation of organism II- Detection of exotoxin Test for toxigenicity Swap from throat & nose Inoculation on Loeffler’s Or BTA for 24 h/37 C

In Vitro: Elek’s Test Principle: It is toxin/antitoxin reaction
Toxin production by C.diphtheriae can be demonstrated by a precipitation between exotoxin and diphtheria antitoxin Procedure: A strip of filter paper impregnated with diphtheria antitoxin is placed on the surface of serum agar The organism is streaked at right angels to the filter paper Incubate the plate at 37C for 24 hrs

Filter paper saturated with diphtheria antitoxin
Resuls: After 48 hrs incubation, the antitoxin diffusing from filter paper strip and the toxigenic strains produce exotoxin, which diffuses and resulted in lines four precipitation lines radiating from intersection of the strip and the growth of organism Lines of precipitations Inoculated organism Positive Elek’s Test

Listeria monocytogenes

Statistics About 2,500 people in the U.S develop Listeriosis each year. 5 out of every 100 people carry Listeria Monocytogenes in their intestines. Listeria Monocytogenes reached the blood and cerebrospinal fluid in 89% of cases. About 20% of people die from the infection. Listeriosis results is a higher number of hospitalizations than any other food-born illness. Pregnant women account for 27% of cases, people with immunodeficiency disorders account for 70% of cases. AIDS patients are 280 times more likely to contract Listeriosis than others.

L. monocytogenes can survive the following refrigerator temperature (4 degrees). Low pH High salt Short, G +ve non spore forming rod catalase positive Motility at but not at 37 degrees

Grows well on 5% sheep blood agar and exhibits the characteristic small zone of hemolysis around and under colonies Facultative anaerobe Catalase positive Produces acid but not gas from utilization of carbohydrates

Has several adhesin proteins (Ami, Fbp A and flagellin) that facilitate bacterial binding to the host cells to contribute to virulence Its cell wall surface protein (Internalin A) interacts with a receptor (E-cadherin) on epithelial cells, promoting phagocytosis into the cell. After phagocytosis, the bacterium is enclosed in a phagolysosome, where the low pH activates the bacterium to produce listerolysin O, an enzyme that lyses the membrane of the phagolysome and allows the listeriae to escape into the cytoplasm of the epithelial cell. Iron is another important virulence factor and Listeriae produce siderophores and are able to obtain iron from transferrin.

What is Listeriosis Listeriosis is a serious infection caused by eating foods contaminated with the bacterium Listeria Monocytogenes. This disease affects primarily pregnant women, newborn, and adults with weakened immune systems.

Symptoms Fever Muscle ache GI Sx: Nausea, diarrhea
Pregnant women: mild flu-like Sx, miscarriage, still birth, premature delivery, or infected newborn. Lethargy irritability If infection spreads to the nervous system: headache, stiff neck, confusion, loss of balance, or convulsions. Listeria can cause Pneumonia, Meningitis, and Sepsis.

Contamination Listeria Monocytogenes is found in soil and water.
Vegetables can become contaminated from the soil or from manure used as fertilizer. Animals can carry the bacterium without appearing ill and can contaminate foods of animal origin such as meats and dairy products. The bacterium has been found in uncooked meats and vegetables, soft cheeses, deli cold-cuts, and unpasteurized milk or foods. If acquired at birth, the incubation period is 7 to 28 days. The average incubation period is 31 days; with a range from 11 to 47 days.

Diagnosis There is no routine screening test for susceptibility.
If symptoms of fever, or stiff neck occurs, consult your doctor. Blood or cerebrospinal fluid culture will show Listeria. During pregnancy, a blood test is the most reliable way to find out if symptoms are due to Listeriosis.

Prevention Thoroughly cook raw food from animal sources.
Wash raw vegetables thoroughly before eating. Separate uncooked meats from vegetables, cooked foods and ready-to-eat foods. Avoid unpasteurized milk or food. Wash hands, knives, and cutting boards with hot soapy water for at least 20 sec after handling uncooked foods. Observe all expiration dates on food items. Consume perishable and ready-to-eat foods as soon as possible. Listeria monocytogenes is killed by cooking or by heating methods, including pasteurization.

Treatment Listeriosis is a serious disease requiring hospitilization.
A combination of antibiotics is given intravenously When infection occurs during pregnancy, antibiotics must be given promptly to the mother to prevent infection of the fetus or newborn. Babies with Listeriosis receive the same antibiotics as adults. The duration of antibiotic treatment is at least 2 weeks. Even with prompt treatment, some infections result in death. Ampicillin, eryhtromycin and trimethoprim-sulfamethoxazole are the susceptible antibiotics; cephalosporins and flourquinolones are not active against L. monocytogenes

5.LACTOBACILLUS (ANEROBES) Normal flora of female genital tract
Obligaete anaerobes Low virulence

Comparison of aerobic G +ve bacilli
Organism Source Disease Capsule Endospore Motility Toxins Corynebacterium diphtheriae Human cases, carriers Diptheria - Diptheria toxin Listeria monocytogenes Food, animals Meningitis, bacteraemia + Lysterolysin O Bacillus B anthracis Imported animal products Anthrax Exotoxin B cereus Ubiquitous Food poisoning, opportunistic infections enterotoxin

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