1. Plutof Bridge from Data Management to the Reporting (=Publishing)
Urmas Kõljalg - Allan Zirk - Kessy Abarenkov
University of Tartu

2. Findable, Accessible, Interoperable and Re-usable
Open Data
&
FAIR DATA
Findable, Accessible, Interoperable and Re-usable

3. Why a Fitness Check?
Because environmental monitoring and reporting can be:
1) not always used to the fullest possible extent or used very late so that the information becomes outdated;
2) ineffective because the same information and data are asked several times or at different moments (i.e. not respecting the principle "report once, use many times");
3) creating sometimes unnecessary extra administrative efforts without clear benefits;
4) organised in a way that is not efficient and does not use information technology to the best possible extent both in the way information is processed within MS and then at the EU level.

4. Common way to the Open Data
Often this mean no FAIR Data because data are stored in repositories as files in different formats. Additional effort needed to recover data from files .
Some journals ask to lodge datasets in public repository like DataONE, etc. In this case again files in different formats are uploaded. Files and metadata are published with DOI.
Datasets are analysed with great variety of software. Data must be usually converted first into suitable format.
Analysing datasets 1 3
Archiving
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Creating datasets
Publishing paper
Datasets are created with spreadsheets, local database, etc.
Results of the analyses are presented in the paper. Datasets are sometimes attached as a Supplementary material. Often it means that datasets are in different file formats and are not machine readable. But they are Open Data s.l.
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5. PlutoF - online data management platform which secure FAIR data
Full data lifecycle from Data Management Plan to the publishing and archiving your datasets

6. Data Lifecycle with PlutoF
Registration and login at
DMP
Data Management Plan describes how data are collected, managed and stored during the research project. Compiling DMP with PlutoF is simple because it is a logical part of your project description and associated datasets.
Create
Datasets are created in PlutoF either by importing data with template csv files or by uploading data manually data via online workbench. Mobile devices can be used for the fast and simple data upload via application Legulus ( )
Create
Manage &
Curate
DMP
Archive
Publish
Share
Archive
PlutoF serves as a archive as well because you may store your datasets here for the unlimited time. Your datasets can be stored as such or they can be published with DOI. Dataset without DOI can be managed and changed if needed in future.
Manage/Curate
Data management and curation is carried in online workbench. sit amet, at pede luctus vel gravida, nonummy massa rutrum lorem volutpat, a nunc ornare, etiam eleifend, fusce id mauris phasellus fusce ultriciesi.
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PlutoF
Publish
There are several ways you may publish your data via PlutoF. You may export data in different formats and publish as a files. You may ask DOI for your dataset or publish data in GBIF. Then DOI is issued by GBIF. Or you can send your data directly to the Pensoft data journal.
Share
In PlutoF you can share your datasets with any other user or workgroup. You can give simple access to your data or even right to edit your data. In this way you may collaborate with other scientists, students and citizen scientists.
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7. Data Management
and
Publishing Platform

9. Reporting is publishing Reporting data is also publishing
Everybody who reports upstairs - correct, publishing too

10. What you need in upstairs?
Correct - you need manageable Fair Data because you need to report further upstairs too

11. Example Global Dataset of Oligochaete
Dataset developed by Tarmo Timm

14. Dataset is downloaded more than 600 times during last four month
Timm T, Abarenkov K (2017). World distribution of the aquatic Oligochaeta. Version 1.9. PlutoF. Occurrence Dataset accessed via GBIF.org on

15. PlutoF Data Management and Publishing Platform Statistics

16. Nearly 500 000 DOIs (Digital Object Identifier) released
Nearly DOIs (Digital Object Identifier) released. Second largest data center in the world in number of released DOIs (DataCite consortium)
PlutoF statistics

17. Scientists and Citizen Scientists from 89 countries made registration and became users of the PlutoF
PlutoF statistics

20. EBV (Essential Biodiversity Variables)

21. Kessy Abarenkov Allan Zirk
Thank you!
Kessy Abarenkov Allan Zirk