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IHTSDO Observables Project Group April 21, 2008 Evanston, Illinois

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Presentation on theme: "IHTSDO Observables Project Group April 21, 2008 Evanston, Illinois"— Presentation transcript:

1 IHTSDO Observables Project Group April 21, 2008 Evanston, Illinois
Exploration of Possible Concept Models for Observable Entities Revised based on discussion IHTSDO Observables Project Group April 21, 2008 Evanston, Illinois

2 Examples of Observables
Histologic type = ? (carcinoma, adenoca,…) Tumor site = ? (lung, brain, …) Ability to hear = ? (able, unable, …) Serum sodium level = ? (N, Abn, 129mg/dl) Pupil size = ?(N, large, small, 9mm, …) Total body water (amount) =?(x…) Response to sound Hearing examination No! This is a procedure

3 Agreement based on prior discussions:
Measurement procedures are different from the observable that they measure More generally, observation procedures are different from the entities they observe

4 A draft model for observables
Organize the observable entity hierarchy using attributes similar to the current measurement procedure attributes Use existing COMPONENT, PROPERTY, TIME ASPECT, and SCALE TYPE Change domain from Measurement procedures to Observables Expand and revise allowable value domains Replace HAS SPECIMEN with SYSTEM (perhaps keep HAS SPECIMEN as a role hierarchy sub-role of SYSTEM) Permit anatomical sites, body substances, as well as specimens Replace MEASUREMENT METHOD with TECHNIQUE (perhaps keep MEASUREMENT METHOD as a role hierarchy sub-role of TECHNIQUE) Create a new techniques value set Move to their own hierarchies, separate from observables: functions processes activities Allow functions, processes, activities also to be values of COMPONENT (in addition to substances, organisms, cell structures) Do not allow observables to be values of COMPONENT

5 SYSTEM / OBSERVABLE SITE
DRAFT model of observables Observable entity COMPONENT Substances, functions, processes, activities, organisms, cell structures PROPERTY Properties SYSTEM / OBSERVABLE SITE Specimens, Sites TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

6 SYSTEM / OBSERVABLE SITE
Example (1): ability to hear (observable) Ability to hear COMPONENT To hear (function) PROPERTY Ability SYSTEM / OBSERVABLE SITE Specimens, Sites TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

7 Example (2): blood hemoglobin concentration
Blood Hb concentration COMPONENT Hemoglobin PROPERTY Concentration SYSTEM / OBSERVABLE SITE Blood TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

8 Example (3): Right Pedal pulse (observable)
R Pedal Pulse COMPONENT Systemic arterial pulse PROPERTY detectability SYSTEM / OBSERVABLE SITE Right dorsalis pedis artery TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE Palpation

9 Example (4): Ability to see red-green (observable)
COMPONENT Red-green color vision (function) = to see red-green PROPERTY Ability SYSTEM / OBSERVABLE SITE Specimens, Sites TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

10 Example (5): Knee-jerk deep tendon reflex briskness (observable)
Knee-jerk reflex briskness COMPONENT Knee-jerk reflex PROPERTY briskness SYSTEM / OBSERVABLE SITE ? Patellar tendon ? Quadriceps muscle TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

11 SYSTEM / OBSERVABLE SITE
Example (6): Head circumference (observable) (option 1) Head circumference COMPONENT Substances, functions, processes, activities, organisms, cell structures PROPERTY Circumference SYSTEM / OBSERVABLE SITE Head TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

12 Example (6): Head circumference (observable) (option 2)
COMPONENT Circumference PROPERTY Distance (linear dimension) SYSTEM / OBSERVABLE SITE Head TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

13 Example (6): Head circumference (observable) (option 3)
COMPONENT Head PROPERTY Distance (linear dimension) SYSTEM / OBSERVABLE SITE Patient TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

14 Alternative model Use “observable property” as the top level of a hierarchy characterized by properties (also known as qualities), which can have locations etc. PROPERTY, COMPONENT and SYSTEM rolled into a single value

15 independent continuant
DRAFT alternative model of observables Observable entity PROPERTY properties INHERES IN independent continuant PROPERTY FUNCTION function PROPERTY SUBSTANCE substances TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

16 Example (1): ability to hear (observable)
PROPERTY ability (property) INHERES IN Subject’s auditory system PROPERTY FUNCTION To hear (function) PROPERTY SUBSTANCE substances TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

17 Example (2): blood hemoglobin concentration
Blood Hb concentration (observable) PROPERTY Concentration (property) INHERES IN Subject’s intravascular blood OF FUNCTION functions OF SUBSTANCE hemoglobin TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

18 Example (3): Right Pedal pulse (observable)
PROPERTY detectability INHERES IN Right dorsalis pedis artery PROPERTY FUNCTION Systemic arterial pulsation PROPERTY SUBSTANCE substances TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE palpation

19 Example (4): ability to see red-green (observable)
PROPERTY ability (property) INHERES IN visual system PROPERTY FUNCTION To see red-green (function) PROPERTY SUBSTANCE substances TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

20 stretch reflex (deep tendon reflex)
Example (5): Knee-jerk deep tendon reflex briskness (observable) Observable entity PROPERTY briskness INHERES IN Quadriceps muscle PROPERTY FUNCTION stretch reflex (deep tendon reflex) PROPERTY SUBSTANCE substances TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

21 Example (6): Head circumference (observable)
Observable entity PROPERTY circumference INHERES IN head PROPERTY FUNCTION function PROPERTY SUBSTANCE substances TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

22 Values for PROPERTY Top levels of value hierarchy – determined by empirical analysis of values in the observables hierarchy Detail Dimension Feature Fluid property Force property Location Quantity Ratio Result Stage Temperature Time Velocity Wave property

23 dimension [2] (possible: size)
observable entity property kind dimension [2] (possible: size) area [20] distance (synonym: linear dimension) breadth [20] circumference [27] depth [7] diameter [31] height [29] length [42] width [11]

24 Replace MEASUREMENT METHOD with more general TECHNIQUE
Proposal: For observation and evaluation procedures, the METHOD (with values from the action hierarchy) represents the goal or objective of what is done: evaluation, testing, imaging, measurement, examination observation techniques define the observable, via TECHNIQUE (with values from a value set that includes lab techniques and other specific measurement and evaluation actions, such as inspection, palpation, percussion, auscultation) Techniques are the means by which the action is carried out, not the intended outcome. Techniques include specific measurement techniques such as Enzyme-linked immunosorbent assay (ELISA). Need to examine whether this works for procedures other than evaluations, i.e. can we make the distinction between METHOD (means) and TECHNIQUE for all procedures

25 Possible use of observables
An observable can represent the object (in the linguistic sense) of a measurement or observation May serve as value for OBSERVATION OF attribute of a measurement or observation procedure An observable can take values to form a finding Serves as value for the INTERPRETS attribute of a clinical finding.

26 Options for Observation Procedures
Link observation procedures to observables via a new attribute OBSERVATION OF Procedure : OBSERVATION OF = observable OR 2. Define observation procedures via a series of attributes (COMPONENT, PROPERTY, SYSTEM, TIMING, SCALE, TECHNIQUE) which also defined the observable that is observed. In this case, the connection from observation procedure to observable is inferable but has no populated attribute.

27 Modeling procedures using OBSERVATION OF
For measurement procedures (observation procedure), the main attributes are METHOD = measurement – action OBSERVATION OF = (observable entity)

28 Option 1: with “OBSERVATION OF”
Observation procedure METHOD observation G OBSERVATION OF Observable entity COMPONENT Substances, functions, processes, activities, organisms, cell structures PROPERTY Properties SYSTEM / OBSERVABLE SITE Specimens, Sites G TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

29 Option 2: no observable intermediary
Observation procedure METHOD observation COMPONENT Substances, functions, processes, activities, organisms, cell structures PROPERTY Properties SYSTEM / PROCEDURE SITE Specimens, Sites G TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

30 Options for Observation Findings
Link observation findings to observables via existing attribute (INTERPRETS) Finding : INTERPRETS = observable OR 2. Define observation findings via a series of attributes (COMPONENT, PROPERTY, SYSTEM, TIMING, SCALE, TECHNIQUE) which also define the observable that is observed. In this case, the connection from observation finding to observable is inferable but has no populated attribute.

31 SYSTEM / OBSERVABLE SITE
Option 1: with “INTERPRETS” Clinical finding HAS INTERPRETATION value G INTERPRETS Observable entity COMPONENT Substances, functions, processes, activities, organisms, cell structures PROPERTY Properties SYSTEM / OBSERVABLE SITE Specimens, Sites G TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

32 Option 2: no observable intermediary
Clinical finding HAS INTERPRETATION value COMPONENT Substances, functions, processes, activities, organisms, cell structures PROPERTY Properties SYSTEM / FINDING SITE Specimens, Sites G TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE techniques

33 Pedal pulse Pedal pulse palpable HAS INTERPRETATION palpable COMPONENT
PROPERTY intensity SYSTEM / FINDING SITE Dorsalis pedis artery G TIME ASPECT Time aspects SCALE / UNITS Scale types, units TECHNIQUE palpation

34 Examples Right pedal pulse (observable)
Right pedal pulse present (finding) Palpation of right pedal pulse (procedure)

35 Right pedal pulse present FINDING SITE
HAS INTERPRETATION palpable G INTERPRETS Right pedal pulse (Observable entity) COMPONENT Systemic arterial pulse G PROPERTY palpability SYSTEM Right dorsalis pedis artery TECHNIQUE palpation

36 Right pedal pulse present FINDING SITE (SYSTEM)
HAS INTERPRETATION palpable COMPONENT Systemic arterial pulse G PROPERTY palpability SYSTEM (FINDING SITE) Right dorsalis pedis artery TECHNIQUE (FINDING METHOD) palpation

37 Palpation of right pedal pulse Observable entity
OBSERVATION OF G METHOD observation - action PROCEDURE SITE COMPONENT Systemic arterial pulse G PROPERTY palpability SYSTEM Right dorsalis pedis artery TECHNIQUE palpation

38 Palpation of right pedal pulse
METHOD observation - action PROCEDURE SITE / SYSTEM COMPONENT Systemic arterial pulse G PROPERTY palpability SYSTEM / PROCEDURE SITE Right dorsalis pedis artery TECHNIQUE palpation

39 Right pedal pulse present FINDING SITE
HAS INTERPRETATION palpable G INTERPRETS Palpation of right pedal pulse Observable entity OBSERVATION OF G METHOD observation - action PROCEDURE SITE COMPONENT Systemic arterial pulse G PROPERTY palpability SYSTEM Right dorsalis pedis artery TECHNIQUE palpation

40 Role composition Can be used to link findings to sites via observables
INTERPRETS ο SYSTEM → FINDING SITE findingX: INTERPRETS = observableY AND observableY: SYSTEM [OBSERVABLE SITE] = siteZ IMPLIES findingX: FINDING SITE = siteZ Example: absent R pedal pulse (finding): INTERPRETS = R pedal pulse (observable) R pedal pulse (observable): SYSTEM = R dorsalis pedis artery (body structure) absent R pedal pulse (finding): FINDING SITE = R dorsalis pedis artery (body structure)

41 Role composition Can be used to link procedures to sites via observables OBSERVATION OF ο SYSTEM → PROCEDURE SITE DIRECT procedureX: OBSERVATION OF = observableY AND observableY: SYSTEM [OBSERVABLE SITE] = siteZ IMPLIES procedureX: PROCEDURE SITE DIRECT = siteZ Example: Measurement of head circumference: OBSERVATION OF = head circumference (observable) Head circumference (observable): SYSTEM = head structure (body structure) Measurement of head circumference: PROCEDURE SITE DIRECT = head structure (body structure)

42 Additional examples

43 Measurement of substance in system
Lab test finding HAS INTERPRETATION value G INTERPRETS Measurement of substance in system observable OBSERVATION OF G METHOD measurement - action COMPONENT substance PROPERTY concentration SYSTEM / OBSERVABLE SITE system

44 Below lower limit of reference range
Low serum sodium HAS INTERPRETATION Below lower limit of reference range G INTERPRETS Measurement of serum sodium concentration Serum sodium concentration OBSERVATION OF G METHOD measurement - action COMPONENT sodium PROPERTY concentration SYSTEM / OBSERVABLE SITE serum

45 of ability to see red-green Ability to see red-green (observable)
Red-green color blind HAS INTERPRETATION unable G INTERPRETS Observation of ability to see red-green Ability to see red-green (observable) OBSERVATION OF G METHOD observation - action COMPONENT To see red-green (function) PROPERTY ability

46 Ability to hear (observable)
Hearing impaired HAS INTERPRETATION impaired G INTERPRETS Observation of ability to hear Ability to hear (observable) OBSERVATION OF G METHOD observation - action COMPONENT To hear (function) PROPERTY ability

47 Lateralization of observations
Four options for the concept on which to place LATERALITY=side FINDING-SITE body structure value Observable Observable-SYSTEM body structure value Observable-COMPONENT value Requires LATERALITY to apply to functions

48 able to hear on the right side HAS INTERPRETATION able
INTERPRETS Ability to hear (observable) FINDING SITE Lateral auditory system (? Ear) LATERALITY right COMPONENT To hear (function) PROPERTY ability

49 able to hear on the right side
HAS INTERPRETATION able G INTERPRETS Ability to hear COMPONENT To hear (function) PROPERTY ability LATERALITY Right

50 able to hear on the right side HAS INTERPRETATION able
INTERPRETS Ability to hear COMPONENT To hear on a side (function) LATERALITY right PROPERTY ability

51 able to hear on the right side Has-interpretation able
Interprets Ability to hear Component To hear (function) Property ability SYSTEM / OBSERVABLE SITE lateral auditory system laterality right

52 Impact on procedure models
METHOD and TECHNIQUE need to be differentiated This may be possible by differentiating: Means Objective Need

53 MON* analysis Procedures can be described in terms of their
Means: how they were done Objective/goal: what was the result intended Need: motivation for the procedure *Shortening of the MOAN Acronym credited to Angelo Rossi Mori

54 Modeling procedures Means: Objective/goal: Need:
Currently modeled with METHOD: incision, excision, etc Objective/goal: Also currently modeled with METHOD Repair, fixation, imaging Need: Modeled with HAS FOCUS Dysfunction, pain, disease

55 Modeling observations
Means: New: TECHNIQUE (an attribute of a procedure or an observable) Objective/goal: Modeled with METHOD, using goal-type actions such as testing, imaging, evaluation, measurement Need: Modeled with HAS FOCUS

56 Examples (1) Microscopic urinalysis (procedure)
Determining the contents of a urine specimen by microscopy METHOD = inspection – action HAS OBSERVABLE = contents of urine determined by microscopy Contents of urine determined by microscopy (observable) TECHNIQUE = microscopy SYSTEM = urine specimen COMPONENT = multiple (cells, casts, crystals, microorganisms, …) PROPERTY = Presence or identity

57 Examples (2) Measurement of serum Borrelia antibody by ELISA (procedure) METHOD = measurement OBSERVATION OF = serum Borrelia antibody (observable) Borrelia antibody (observable) PROPERTY = concentration COMPONENT = Borrelia antibody (substance) SYSTEM = serum TECHNIQUE = Enzyme Linked Immunosorbent Assay

58

59 Models rejected

60 Observation procedure
Clinical finding Interprets Observation procedure Component Observable entity Component Function

61 Red-green color blind (finding)
Observation of ability to see red-green (procedure) Interprets Ability to see red-green (observable) Component Red-green color vision (function) Component


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