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The Cool Season Food Legume Database: An Integrated Resource for Basic, Translational and Applied Research Dorrie Main, Chun-Huai Cheng, Stephen Ficklin,

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Presentation on theme: "The Cool Season Food Legume Database: An Integrated Resource for Basic, Translational and Applied Research Dorrie Main, Chun-Huai Cheng, Stephen Ficklin,"— Presentation transcript:

1 The Cool Season Food Legume Database: An Integrated Resource for Basic, Translational and Applied Research Dorrie Main, Chun-Huai Cheng, Stephen Ficklin, Marwa Sanad, Sook Jung, Taein Lee, Ping Zheng, Clarice Coyne, Rebecca McGee and Keithanne Mockaitis

2 Outline Introduction Data and function overview Future development
Acknowledgements

3 What is the CSFL Genome Database?
A pulse database focusing on providing centralized access to tools and data to enable basic, translational and applied research in pea, chickpea and lentil. Built using the open-source, user-friendly, Tripal database infrastructure used by several other databases. Collaborative module development and data exchange with LIS and KnowPulse

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6 Species Pages

7 Data Overview

8 Trait/Marker Data and Tools
Collecting all publicly available trait (MLT/QTL) and marker data for pea, chickpea and lentil Add associated markers Assign plant ontology to traits QTL search site available Marker search site available Obtain associated map data and more detailed marker information from authors

9 Search Traits

10 Trait Search Results

11 QTL Details Page

12 Search Markers

13 Search Markers

14 Search Markers

15 Search Markers

16 Search Markers

17 Marker Search Results Will also add map position and germplasm

18 Marker Details Page Will also add more data where it is available, genetic map, location on genome(s)

19 Sequence Search

20 Sequence Search Results

21 Search Details Page

22 Genome Viewer: GBrowse

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26 Future Developments Submit an NRSP for core development of Tripal and database support for 24 crops Adding a gene search site Generating a pea unigene v3 Adding genomic/genetic data for fava bean Continue to add genomic/genetic data for pea, chickpea and lentil Start to create a breeders toolbox

27 Acknowledgements Mainlab Bioinformatics Team USDA Grain Legumes Team
USDA Plant Introduction Team WSU Department of Horticulture Legume Information System University of Saskatchewan Pulse Crop Research Group USDA Specialty Crop Research Program grants for tfGDR and RosBREED ( )


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