1. CS515: Bioinformatic Algorithms
Overview of class
CS515: Bioinformatic Algorithms
Dr. Robert Heckendorn

2. Instructor Dr. Robert Heckendorn Web Page:

3. Course Content First 8 chapters or so chapters of Durbin
Lots of supplemental material
Shotgun sequencing
Avida simulation
Try some Python
Focus on algorithms that process sequences

4. Class Composition Class background is varied: CS, biologist, math...
I am a CS person and not a biologist

5. Class Page Content Class News About the Class Syllabus Assignments
Submit assignments
Class policies
Helpful handouts

6. Syllabus
The syllabus is based on last time class was taught and is only an estimate
Assignment links are only active after assignment has been made
Homework problems change (we will have about 6 assignments + a short presentation)
At least two tests (including the final)

7. Submitting Homework Submitted via Web site Use correct file format
Submit as many times as you want
Last submission before due time is the one graded.
Code will be compiled and run on test machine and results compared against expected results

8. Tips and Policy Partial credit so always submit something
There are no late assignments
Medical problems/family emergencies etc require paper documentation
Ask questions. If you are lost then ask

9. Tips and Policy Laptops in class are great
Do your own work unless otherwise specified

10. Class News Hints on assignments Delay of due date
Special announcements
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