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MICROBIOLOGY Practical Class
FOUNDATION BLOCK (2017) Dr . Malak M. El-Hazmi & Dr. Khalifa Binkhamis
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MICROBIOLOGY
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Microscopic examination. culture. Serological tests (Ab).
Laboratory diagnosis of infections . ID Microscopic examination. culture. Serological tests (Ab). Detection of Ag. Molecular method .
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Types of specimens
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Bacteriology
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Gram Stain G- bacilli
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Bacterial cell wall
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Bacterial Shapes and Arrangements
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Gram-positive bacilli Gram-negative bacilli
Gram Stain Gram-positive bacilli Gram-positive cocci Gram-negative bacilli Gram-negative cocci
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GRAM POSITIVE BACTERIA
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GRAM POSITIVE COCCI
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GRAM POSITIVE COCCI
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GRAM NEGATIVE BACTERIA
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Gram negative cocci (Diplococci ) e.g Neisseria Gram negative bacilli e.g E. coli Salmonella
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Gram positive cocci in chain Streptococci
Gram positive cocci in clusters Staphylococci Rx Penicillin Cephalosporin cloxacillin Cephalosporin if MRSA vancomycin
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Streptococcus pneumoniae
A gram-stained smear of a CSF sample from a 3 year old child seen in the emergency department presenting with fever and neck stiffness. Gram-positive diplococci & pus cells Streptococcus pneumoniae
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This is a bacterium isolated from a child with sore throat and tonsillitis .
A: Describe the Gram stain Gram positive B: Describe the shape and arrangement of the bacteria Cocci in chains
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Following is the Gram stained smear of an organism isolated from
a wound infection. Describe what you see in the slide above. Gram-positive cocci in clusters What is the likely organism ? Staphylococcus aureus
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complaining of urethral discharge
Following is the Gram-stained smear of from urethra of a 25 –year old male complaining of urethral discharge Describe the Gram stain of the intracellular bacteria Gram negative Describe the shape of the bacteria cocci ( diplococci)
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Describe its shape Describe the Gram stain of this organism:
Gram negative Describe its shape bacilli ( rods )
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Bacterial Culture Media
Purpose Type of Media Suppression of unwanted microbes; encouraging desired microbes. Selective Differentiation of colonies of desired microbes from others. Differential Similar to selective media but designed to increase number of desired microbes to detectable levels. Enrichment
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Bacterial Culture Media
Enriched medium (Chocolate Agar) General culture medium (Blood Agar) Selective medium (Thiosulphate citrate bile salt sucrose TCBS) Differential medium (MacConkey Agar)
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Bacteria culturing 2-streaking 1-Inoculation 3-Incubation
Laboratory Incubator
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Identification of streptococci by hemolytic reaction
No haemolysis Colonies are surrounded by partial hemolysis with greenish color Colonies are surrounded by clear zone of hemolysis complete hemolysis Gamma-hemolytic Streptococcus colonies Enterococcus faecalis Alpha-hemolytic Streptococcus colonies St. pneumoniae Beta-hemolytic Streptococcus colonies St. pyogenes
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Identification of streptococci by hemolytic reaction
Beta-hemolytic Streptococcus colonies Alpha-hemolytic Streptococcus colonies Gamma-hemolytic Streptococcus colonies
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GRAM NEGATIVE BACTERIA
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MacConkey's agar (Deferential medium)
non-lactose fermenting colonies salmonella Lactose fermenting colonies E. coli MacConkey's agar
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Antibiotic susceptibility testings
Biochemical testings To confirm the identity of bacteria. Antibiotic susceptibility testings
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Sensitivity testing
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Automated instrument for identification and susceptibility testings
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This is a general culture medium used for culture of bacteria.
Blood agar This is a general culture medium used for culture of bacteria.
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This is a blood agar growing beta hemolytic streptococci.
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This culture was grown from a sputum specimen of a 60 year old man complaining of cough, fever and chest pain. α hemolytic streptococci on blood agar
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Name the medium Blood agar Name its most important ingredient (constituent) Blood Name its main use Culture and isolate bacteria
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This is a special stain for a sputum of a patient complaining of chronic cough , fever loss of appetite and blood in coughed sputum. A: Name the bacterium : Mycobacterium tuberculosis B: Name the disease tuberculosis
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VIROLOGY
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Viral structure Icosahedral Virus Helical Virus
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Viral Classification
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Viral Electron Micrographs
Adenovirus Herpes virus Influenza Viruses Rabies virus
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Herpes simplex virus -1 : Herpesviridae
Enveloped virus Icosahedral capsid d.s DNA genome Loose envelope
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These are electron micrographs of a virus
َ. Herpes virus Q1: Name this virus Enveloped virus , Icosahedral capsid, d.s DNA genome Q2: Describe its structure.
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Adenovirus : Adenoviridae
Nonenveloped virus Icosahedral capsid d.s DNA genome Only V with fiber
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This is an electron micrograph of a virus
. Adenovirus Q1: Name this virus Nonenveloped virus, with fiber Icosahedral capsid & d.s DNA genome Q2: Describe its structure.
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Rabies virus: Rhabdoviridae
Enveloped virus Helical capsid s.s RNA genome Bullet shape
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This is an electron micrograph of a virus
Q1: Name this virus Rabies virus Enveloped virus , Helical capsid & s.s RNA genome Q2: Describe its structure.
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Influenza Viruses : Orthomyxoviridae
Enveloped V & spikes Helical capsid Segmented s.s RNA Pleomorphic shape
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This is an electron micrograph of a virus
Q1: Name this virus Influenza Viruses Enveloped Virus with spikes , Helical capsid ,Segmented s.s RNA Q2: Describe its structure
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parasitology
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Classification of Parasites
Helminths Protozoa Mulicellular Specialized cells Unicellular Single cell for all function Round worms (Nematodes) cylindrical, unsegmented Flat worms 1-Trematodes: leaf-like, unsegmented. 2-Cestodes: tape-like, segmented Amoebae: move by psudobodia. Flagellates: move by flagella. Ciliates : move by cilia Apicomplexa (sporozoa) Tissue parasites
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Ascaris lumbricoides (roundworm)
Ascaris adult
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Taenia saginata Cestodes
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The Trematodes
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Giardia lamblia trophozoite
Two nuclei, each with central karyosome Four pairs of flagella
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Giardia lamblia cyst Mature, infective cyst, containing 4 nuclei
Note a straight axoneme running longitudinally
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LICE Louse(singular) , Lice (pleural) Pediculus humanus
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Phlebotomus ( sand fly)
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Mosquitoes :
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Following is the microphotograph of an organism found in
the upper part of the small intestine . Name the Organism Giardia lamblia What is the Stage? Trophozoite stage
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Following is the microphotograph of an organism found in stools
Name the Organism Giardia lamblia What is the Stage? Cyst stage
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mycology
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Fungi can be divided to two types based on morphology
A B Based on morphology, name the two fungal structures in A and B? A: Yeast B: Mould fungi e.g. Candida e.g. Aspergillus
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Microscopic appearance of yeast and mould fungi
A B Name the two fungal structures in A and B? A: Budding yeast cells B: Branching Fungal hyphae e.g. Candida e.g. Aspergillus
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End B
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