1. Genome Database for Rosaceae
Newly designed GDR,
Genome Database for Rosaceae
Sook Jung, Taein Lee, Chun-Huai Cheng, Ping Zheng, Jodi Humann, Sushan Ru, Kristin Scott, Morgan Frank, Jing Yu, Ksenija Gasic, Jim McFerson, Kate Evans, Cameron Peace, Lisa DeVetter, Dorrie Main

2. GDR Data 16 Genome assemblies 242,182 Genes 180 Genetic Maps 2,900,263
Markers
2,695
QTLs and MTLs
18,641
Germplasm
10,511,195
Genotypes
876,885
Phenotypes
6,888
Publications

3. GDR Homepage

4. Genus overview page

5. Genus page: Genomes

6. Genome page

7. Genus page: Synteny viewer
New synteny analysis among
Prunus persica v2.0, Fragaria vesca v2.0, Malus x domestica v3.0p, and Pyrus communis v1.0

8. Tools Quick Start (Genomics)

9. Search Genes

10. Gene Search Results

11. Gene/mRNA parsed from NCBI nr database

12. Tools Quick Start (Genetics)

13. Search Markers

14. Marker Search Result

15. Marker Page

16. Search SNP Markers

17. Tools Quick Start (Breeding)

18. Breeders Toolbox: Phenotype Search

19. Breeders Toolbox: Phenotype Search

20. Breeders Toolbox: Phenotype Search Result
Breeders toolbox will be replaced with the new BIMS system where breeders can upload their own data

21. Main Header Bar

22. Main Header Bar: Search

23. SNP Genotype Search

24. SNP Genotype Search Result

25. Search QTL

26. Search results

27. Main Header Bar: Data

28. Data Overview

29. Main Header Bar: Data

30. Gene Class in Rosaceae

31. Gene Class in Rosaceae

32. Rosaceae Trait Ontology

33. Future Development BIMS (Breeding Information Management System)
Map Viewer (Integrated comparative map viewer)
Site-wide search
Bio-Mart type search/download tools
All these are being developed as Tripal Modules
Current Mainlab modules (template/loader, data display, search modules) have been released

34. Funding and Acknowledgement